Locus 820

Sequence ID 3R_DroMel_CAF1
Location 2,806,943 – 2,807,038
Length 95
Max. P 0.963097
window1305

overview

Window 5

Location 2,806,943 – 2,807,038
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 89.74
Mean single sequence MFE -34.91
Consensus MFE -27.43
Energy contribution -27.31
Covariance contribution -0.12
Combinations/Pair 1.19
Mean z-score -2.29
Structure conservation index 0.79
SVM decision value 1.55
SVM RNA-class probability 0.963097
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2806943 95 + 27905053
GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAAAAAUACAUGGACCGGGAUUGCAUCGGA
.......((((.((((((.((((..(((...((((((((((((....))))))))......))))...)))...))))...))))))...)))). ( -33.60)
>DroSec_CAF1 82444 93 + 1
GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAA--AAACAUGGACCGGGAUUGCAUCGGA
.......((((.((((((.((((.((((...((((((((((((....))))))))......))))..)--))).))))...))))))...)))). ( -35.50)
>DroSim_CAF1 86622 95 + 1
GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAAAAAAACAUGGACCGGGAUUGCAUCGGA
.......((((.((((((.((((.((((...((((((((((((....))))))))......))))....)))).))))...))))))...)))). ( -35.10)
>DroEre_CAF1 84268 92 + 1
GCGCUCGCCGAGAAUUCCCCCAUCUUGUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAA-AAUAUAUGGACCGGGG--GACUUGGA
.......(((((...((((((.(((((..(.((..((((((((....))))))))..)).)..))...-.......)))..))))--))))))). ( -37.30)
>DroYak_CAF1 85389 92 + 1
GCUCUCGCCGAGAAUUCCCCCAUCUUGUGAGUGCAGGCAAUGCAUUUGCAUUGGCGCCAGUUGCAAAA-UAUAUAUGGACCGGGG--GACUUGGA
.......(((((...((((((....((..((((((.....))))))..))..((..(((.........-......))).))))))--))))))). ( -33.06)
>consensus
GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAA_AAUACAUGGACCGGGAUUGCAUCGGA
.......((((.((((((.((((........((((((((((((....))))))))......)))).........))))...))))))...)))). (-27.43 = -27.31 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:56 2006