Locus 8189

Sequence ID 3R_DroMel_CAF1
Location 22,007,507 – 22,007,627
Length 120
Max. P 0.829969
window13179

overview

Window 9

Location 22,007,507 – 22,007,627
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -45.62
Consensus MFE -37.38
Energy contribution -39.00
Covariance contribution 1.62
Combinations/Pair 1.06
Mean z-score -2.29
Structure conservation index 0.82
SVM decision value 0.71
SVM RNA-class probability 0.829969
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22007507 120 + 27905053
CGUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA
.(..(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))..)((.(((...(((((((.....)))))))))).))........... ( -47.30)
>DroSim_CAF1 43787 120 + 1
CGUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA
.(..(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))..)((.(((...(((((((.....)))))))))).))........... ( -47.30)
>DroEre_CAF1 49524 120 + 1
CUUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA
....(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))...((.(((...(((((((.....)))))))))).))........... ( -47.10)
>DroAna_CAF1 53462 119 + 1
CUUCGGCUUUGUCAUAAAACUUUUCUGCCAGCAGCUGCCAAAGGAAGUUGACG-GCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCAAGUCGGAGCGACAAAAUUAAGUA
.......((((((.............(((..(((((.((...)).)))))..)-))..((((((((((..(..(((.........)))..)..)))))).))))..))))))........ ( -40.80)
>consensus
CGUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA
....(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))...((.(((...(((((((.....)))))))))).))........... (-37.38 = -39.00 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:51 2006