| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,970,947 – 21,971,057 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 21,970,947 – 21,971,057 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.13 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -12.61 |
| Energy contribution | -13.41 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21970947 110 - 27905053 -----UUUGUCGACUGUUGAAUAAUUCAGUUGAGCAACUCCACCCCAAUGGGGGGGAACCCAACUGGCCUUUGCCGAAAGGUAAACGAUAUUUUAAAUAUUAAAAUGGUUUAAAG -----..(((((.............(((((((.(....(((.((((....)))))))..))))))))..((((((....))))))))))).(((((((.........))))))). ( -31.60) >DroGri_CAF1 28532 97 - 1 UUAUUAUUGUCGCCUGCUGAAUUAUUUAUUCGGAAAAUUCUGUGCUG----------CGCUAUUUUCUCUUU--------GCGAAUGAUAUUUUAAAUAUUAAAAUGGUUCGACA .......((((....((.((((.....))))(((((((..((.....----------))..)))))))....--------))((((..(((((((.....))))))))))))))) ( -15.10) >DroSec_CAF1 10339 110 - 1 -----UUUGUCGACUGUUGAAUUAUUCAGUUGAGCAACUCCACCCCAACCGGGGAGAACCCAACUGGCCUUUGCCGAAAGGUAAACGAUAUUUUAAAUAUUAAAAUGGUUUAAUG -----..........(((((((((((((((((.(...((((.((......))))))...))))))).(.((((((....)))))).)................))))))))))). ( -28.90) >DroSim_CAF1 13106 110 - 1 -----UUUGUCGACUGUUGAAUAAUUCAGUUGAGCAACUCCACCCCAACCGGGGAGAACCCAACUGGCCUUUGCCGAAAGGUAAACGAUAUUUUAAAUAUUAAAAUGGUUUAAUG -----.((((((((((..........))))))).))).....((((....)))).(((((.......(.((((((....)))))).)..((((((.....))))))))))).... ( -28.50) >DroEre_CAF1 10219 92 - 1 -----UUUGUCGAA--CUGAAUUAUUCAGUUGAGCAACUCCACC----------------CAACUGGACUUUGCCGAAAGGUAAACGAUAUUUUAAAUAUUAAAAUGGUUGAAUG -----.((((..((--((((.....))))))..)))).((((..----------------....)))).((((((....))))))((((((((((.....)))))).)))).... ( -22.10) >DroYak_CAF1 10987 106 - 1 -----UUUGUCGAA--CUGAAUUAUUCAGUUGAGCAACUCCACCCAAACGAA--GGAACCCAACUGGCCUUUGCCGAAAGGUAAACGAUAUUUUAAAUAUUAAAAUGGUUUAAUG -----.((((..((--((((.....))))))..))))...........((((--((...((....))))))))((....))(((((..(((((((.....))))))))))))... ( -21.60) >consensus _____UUUGUCGACUGCUGAAUUAUUCAGUUGAGCAACUCCACCCCAAC_GG___GAACCCAACUGGCCUUUGCCGAAAGGUAAACGAUAUUUUAAAUAUUAAAAUGGUUUAAUG .......(((((.............(((((((............................)))))))..((((((....)))))))))))......................... (-12.61 = -13.41 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:10 2006