Locus 816

Sequence ID 3R_DroMel_CAF1
Location 2,783,060 – 2,783,152
Length 92
Max. P 0.519178
window1299

overview

Window 9

Location 2,783,060 – 2,783,152
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 92.73
Mean single sequence MFE -28.73
Consensus MFE -20.56
Energy contribution -20.44
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -2.13
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.519178
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2783060 92 + 27905053
CAGGGC--------AGUGGAAAUCGGAGGCCAGGUAUUCCUAUAUGGCAACCCAAGGAAUAUUUGUGGUAAAUUGAACAGAUUUCAGCUGUGCAAGACGC
..(.((--------(((.((((((.((.(((((((((((((...(((....))))))))))))..))))...)).....)))))).))))).)....... ( -27.90)
>DroSec_CAF1 58616 100 + 1
CAGGGCGGAAAAACAGCGGAAAUCGAAGGCCAGGUAUUCCUAUAUGGCAACCCAAGGAAUAUUUGUGGUAAAUUGAACAGAUUUCAGCUGUGCAAGACGC
....(((.....(((((.((((((....(((((((((((((...(((....))))))))))))..))))..........)))))).)))))......))) ( -30.34)
>DroSim_CAF1 61435 100 + 1
CAGGGCGGAAGAACAGCGGAAAUCGGAGGCCAGGUAUUCCUAUAUGGCAACCCAAGGAAUAUUUGUGGUAAAUUGAACAGAUUUCAGCUGUGCAAGACGC
....(((.....(((((.((((((.((.(((((((((((((...(((....))))))))))))..))))...)).....)))))).)))))......))) ( -30.50)
>DroEre_CAF1 59774 92 + 1
CAGGGC--------AGCGGAAAUCGGAGGCCAGGUAUUCCUAUACGGCAACCCAAGGAAUAUUUGUGGUAAAUUGAACAGAUUUCAGCUGUGCAAGACGC
..(.((--------(((.((((((.((.(((((((((((((....(....)...)))))))))..))))...)).....)))))).))))).)....... ( -29.10)
>DroYak_CAF1 59175 91 + 1
CAG-GC--------AGCGGAAAUCGGAGGCCAGGUAUUCCUAUACGGCAACCCAAAGAAUAUUUGUGGUAAAUUGAACAGAUUUCAGCUGUGCAAGACGC
...-((--------(((.((((((....((((((....)))....))).(((((((.....)))).)))..........)))))).)))))......... ( -25.80)
>consensus
CAGGGC________AGCGGAAAUCGGAGGCCAGGUAUUCCUAUAUGGCAACCCAAGGAAUAUUUGUGGUAAAUUGAACAGAUUUCAGCUGUGCAAGACGC
..............(((.((((((.((.(((((((((((((....(....)...)))))))))..))))...)).....)))))).)))........... (-20.56 = -20.44 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:51 2006