Locus 8150

Sequence ID 3R_DroMel_CAF1
Location 21,913,752 – 21,913,842
Length 90
Max. P 0.699785
window13106

overview

Window 6

Location 21,913,752 – 21,913,842
Length 90
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.69
Mean single sequence MFE -15.31
Consensus MFE -12.00
Energy contribution -11.75
Covariance contribution -0.25
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.78
SVM decision value 0.35
SVM RNA-class probability 0.699785
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21913752 90 + 27905053
----AGUCACAAUCA------------CAGCCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAGCGUGCAGCCAAUUAUCAGCAUGCAUAUAUGCAUU
----(((((......------------(((.............)))....))))).((((((((.......((((((............))))))..)))))))). ( -15.82)
>DroPse_CAF1 31346 100 + 1
----GCCCCCAAUCUUGGCCACAAUCUCCAUCUCCAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU--AUGCAUC
----(((.........))).........................((((.((((....((((..((.....))..)))).....)))).))))(((..--..))).. ( -13.20)
>DroEre_CAF1 29687 90 + 1
----AGUCACAAUCA------------CAGCCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAGCGUGCAGCCAAUUAUCAGCAUGCAUAUAUGCAUU
----(((((......------------(((.............)))....))))).((((((((.......((((((............))))))..)))))))). ( -15.82)
>DroYak_CAF1 29186 98 + 1
----AGUCACAAUCA----CAGAGUCACAGCCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAGCGUGCAGCCAAUUAUCAGCAUGCAUAUAUGCAUU
----...........----..((((((.(((..............)))..))))))((((((((.......((((((............))))))..)))))))). ( -22.54)
>DroAna_CAF1 29687 92 + 1
AUACAAUCACAUUCA------------CAAUCACAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU--AUGCAUC
...............------------.................((((.((((....((((..((.....))..)))).....)))).))))(((..--..))).. ( -11.30)
>DroPer_CAF1 31457 100 + 1
----GCCCCCAAUCUUGGCCACAAUCUCCAUCUCCAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU--AUGCAUC
----(((.........))).........................((((.((((....((((..((.....))..)))).....)))).))))(((..--..))).. ( -13.20)
>consensus
____AGUCACAAUCA____________CAACCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU__AUGCAUC
............................................((((.((((....((((..((.....))..)))).....)))).))))((((....)))).. (-12.00 = -11.75 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:42 2006