| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,776,827 – 2,776,919 |
| Length | 92 |
| Max. P | 0.596727 |
| Location | 2,776,827 – 2,776,919 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.85 |
| Mean single sequence MFE | -18.02 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.16 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2776827 92 + 27905053 CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCGCAUUCAAGAUGCUCA-------------CACAGCAUCCAAAA-AAAGCUU- .......((...........((((((....((....))....))))))...............((((((..-------------...)))))).....-...))..- ( -18.10) >DroVir_CAF1 100259 85 + 1 CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCACAUUCUGUGUGCAC---------------ACAGCAUCUCA------GCAU- .......((...........((((((....((....))....))))))............(((((....)---------------)))).......------))..- ( -17.30) >DroGri_CAF1 96898 85 + 1 CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAAUGCGUGCACAUUCCACAUUCUGUGUGCUC---------------ACAGCACCUCA------GCCC- ....................((((((....((....))....))))))............(((.((((..---------------...))))..))------)...- ( -16.60) >DroWil_CAF1 68797 105 + 1 CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCGCAUUCAG--UGCUCAGUGCCCAAACACACACAGCAUCAACAAGAAGGCCAA .......((...(((((...((((((....((....))....))))))..............(--((((..(((........)))..)))))....))))).))... ( -18.30) >DroMoj_CAF1 103190 85 + 1 CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCACAUUCUGUGUGCUC---------------ACAGCAUCGCC------GCAU- ..((((.((...........((((((....((....))....))))))............(((((....)---------------))))....)).------))))- ( -19.40) >DroAna_CAF1 49623 93 + 1 CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCGCAUUCAAGAUGCUCA-------------CACAGCAUCCCAAAAAGAGCUA- .......((...(((((...((((((....((....))....))))))...............((((((..-------------...))))))..)))))..))..- ( -18.40) >consensus CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCACAUUCAGUGUGCUC_______________ACAGCAUCCCA______GCAU_ .......((...........((((((................))))))................(((((..................)))))..........))... (-11.10 = -11.16 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:49 2006