Locus 813

Sequence ID 3R_DroMel_CAF1
Location 2,775,742 – 2,775,839
Length 97
Max. P 0.527741
window1296

overview

Window 6

Location 2,775,742 – 2,775,839
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.59
Mean single sequence MFE -21.12
Consensus MFE -14.17
Energy contribution -13.86
Covariance contribution -0.30
Combinations/Pair 1.31
Mean z-score -1.41
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.527741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2775742 97 - 27905053
GGUGUGCGAUUGACCACAG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGGGGGCAUAGAAGGGGG
..(((((..(((..(((.(-(((((.((((....)))).)).))))..........(((((......)))))..)))...)))..)))))........ ( -22.30)
>DroVir_CAF1 98818 90 - 1
CGUGUGCGAUUGACCGAAGGCGCAUAUAAUAAAAAUUAAAUCGCACAAAAUAAAAAUGUUUAAGAGGC--------GAGUCAGAGGCACAAAACCGAC
..(((((..(((((((...(((.((.((((....)))).)))))...(((((....)))))......)--------).)))))..)))))........ ( -17.50)
>DroGri_CAF1 95227 90 - 1
CGUGUGCGAUUGACCAAAGGCGCAUAUAAUAAAAAUUAAAUCGCACAAAAUAAAAAUGUUCAAGUGGC--------GAGUCGGAGGCACGAAACCGAC
.(((((((.((......)).))))))).............((((.((.((((....))))....))))--------))(((((..........))))) ( -17.60)
>DroSec_CAF1 51344 97 - 1
GGUGUGCGAUUGACCACAG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGUGGGCACAGAGGGGGG
..(((((......((((.(-(((((.((((....)))).)).))))..........(((((......))))).........)))))))))........ ( -24.10)
>DroSim_CAF1 54199 97 - 1
GGUGUGCGAUUGACCACAG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGUGGGCACAGAGGGGGG
..(((((......((((.(-(((((.((((....)))).)).))))..........(((((......))))).........)))))))))........ ( -24.10)
>DroEre_CAF1 52905 97 - 1
GGUGUGCGAUUGACCAAGG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGAGGUGGGAAGCGGGGGCACAGAGGGGGA
..(((((..(((.(((..(-(((((.((((....)))).)).))))..........(.(((......))).).)))....)))..)))))........ ( -21.10)
>consensus
GGUGUGCGAUUGACCAAAG_CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGGGGGCACAGAAGGGGG
..(((((((((...........................)))))))))..........((((..(((............)))..))))........... (-14.17 = -13.86 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:48 2006