| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,831,541 – 21,831,650 |
| Length | 109 |
| Max. P | 0.981362 |
| Location | 21,831,541 – 21,831,650 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.56 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -18.88 |
| Energy contribution | -18.80 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21831541 109 - 27905053 CCAAUAAAAAAAAAACAA-AACCAA---ACUACAACAAAAUGGUUCUGGAAAUGGAGAUGUCCAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCCAUGCUGGAGCGUAAGCG ..................-..(((.---.............(((..((((.((....)).))))..)))..(((.((((....)))).))).........))).((....)). ( -25.40) >DroPse_CAF1 12708 95 - 1 UCGACAAAGA-----CAG-U------------GAUCACCAUGGUGCUGGAGAUGGAAAUGUCCAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCCAUGCUGGAGAGGAAGCG ..........-----...-.------------..(((.(((((.((((((.((....)).)))........(((.((((....)))).))))))))))).))).......... ( -28.30) >DroEre_CAF1 8124 108 - 1 UCUACAAAAA-AAAAUAA-AACCAA---ACUACUACAAAAUGGUUCUGGAAAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCCAUGCUGGAGCGCAAGCG (((((.....-.......-..((((---((((........))))).)))..((((..(((((...))))).(((.((((....)))).)))...))))).))))((....)). ( -26.60) >DroYak_CAF1 8226 107 - 1 UCUACAAAAA-AA----C-CACCAAAUCACUACAACAAAAUGGUUCUGGAAAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCCAUGCUGGAGCGUAAGCG ..........-..----(-((((((((((...........))))).)))..((((..(((((...))))).(((.((((....)))).)))...))))..))).((....)). ( -25.50) >DroMoj_CAF1 10386 91 - 1 ------------------UAACCAU---AGU-AGACAUCAUGGUGCUAGAAAUGGAAAUGUCCAAGACAUAUCAAUAUCGUAAGGUGAUGAAGCCCAUGCUGGAGCGGAAGCG ------------------.......---...-...((.(((((.(((.....((((....)))).......(((.((((....)))).))))))))))).))..((....)). ( -26.20) >DroAna_CAF1 11343 96 - 1 CC-----------AACAA-GACUCA---A--GCAAAGACAUGGUUCUCGAAAUGGAAAUGUCUAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCCAUGCUGGAGCGGAAGCG ..-----------.....-...((.---(--(((.((((((..(((.......))).))))))........(((.((((....)))).)))......)))).))((....)). ( -27.10) >consensus UC_ACAAAAA_____CAA_AACCAA___ACUACAACAAAAUGGUUCUGGAAAUGGAAAUGUCCAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCCAUGCUGGAGCGGAAGCG ...................................((..((((.........((((....)))).......(((.((((....)))).)))...))))..))..((....)). (-18.88 = -18.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:07 2006