Locus 8109

Sequence ID 3R_DroMel_CAF1
Location 21,780,373 – 21,780,478
Length 105
Max. P 0.768389
window13047

overview

Window 7

Location 21,780,373 – 21,780,478
Length 105
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 72.10
Mean single sequence MFE -16.09
Consensus MFE -1.65
Energy contribution -4.57
Covariance contribution 2.92
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.10
SVM decision value 0.52
SVM RNA-class probability 0.768389
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21780373 105 - 27905053
GCAAUUUUUAAUUAAUAUCAAUCAACUCUGAAGAUUUAUCCAGAAAUGUCAAAU-----CGUUU----UAAGAGUUUCUGCUUAAAACACUUUAAUUAAACAUUGCUCGAAUUA
(((((.(((((((((.................(((((...((....))..))))-----)((((----((((........))))))))...))))))))).)))))........ ( -21.60)
>DroSec_CAF1 46779 104 - 1
-CAAUUUUUAAUUAAUAUCAACCAACUCUGAAGAUUUAUCCAAAAAUGUCAAAU-----CGUUU----UUAGAGUUCUUGCUUAACACACUUUAAUUAAACAUUGCUCGAAUUA
-((((.(((((((((........((((((((((((...................-----.))))----))))))))..((.....))....))))))))).))))......... ( -13.45)
>DroSim_CAF1 48969 96 - 1
GCAAUUUUUAAUUAAUAUCAACCAACUGUGAAGAUUUAUCCAGAAAUGUCAAAU-----CGCUU----UUAGAGUUCUUGCU---------UUAAUUAAACAUUGCUCAAAUUA
(((((.(((((((((...(((..((((.(((((((((...((....))..))))-----)...)----))).)))).)))..---------))))))))).)))))........ ( -18.90)
>DroEre_CAF1 55728 99 - 1
ACAAUUUUUAAUUAAAAUCAAA-------CAAGAUUUACGCAGAAACAAGAUUUUACCACGUUGUUGUAAAGAGUUUUUGCCUAACACAUUUUAAUUAU-----ACUCAAA---
........(((((((((((...-------...)))))..((((((((....((((((.((...)).)))))).))))))))...........)))))).-----.......--- ( -13.40)
>DroYak_CAF1 47521 104 - 1
GCAAUUUUUAAUUAAAAUCUACGAGCUCUGAAGAUUUAUCCAGAAAUGUCAAAU-----AAGUGUUGCUUUGAGUUUUGGCUUAACACACUUUAAUUAU-----ACUAAAAUUA
(((((.((((....((((((.((.....)).))))))...((....)).....)-----))).)))))....((((((((..(((..........))).-----.)))))))). ( -13.10)
>consensus
GCAAUUUUUAAUUAAUAUCAACCAACUCUGAAGAUUUAUCCAGAAAUGUCAAAU_____CGUUU____UUAGAGUUUUUGCUUAACACACUUUAAUUAAACAUUGCUCAAAUUA
(((((.(((((((((.(((.............))).....(((((((..........................)))))))...........))))))))).)))))........ ( -1.65 =  -4.57 +   2.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:45 2006