Locus 810

Sequence ID 3R_DroMel_CAF1
Location 2,752,535 – 2,752,639
Length 104
Max. P 0.624615
window1292

overview

Window 2

Location 2,752,535 – 2,752,639
Length 104
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 88.81
Mean single sequence MFE -24.17
Consensus MFE -19.04
Energy contribution -19.48
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.624615
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2752535 104 + 27905053
GAAACCCAUCCUACCCGCAACAAAAAACAA--AAAGGA---AACAACAGCAGCGGCCACAUCAUGGAGCCUAGGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG
..............................--...(..---..).......(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -23.50)
>DroSec_CAF1 28133 109 + 1
GAACCCCAUCCUACCCGCAACAAUAAGGAAACAACGGCAACAACAACAGCAGCGGCCACAUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG
................((........(....)...(....).......)).(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -27.50)
>DroSim_CAF1 30752 109 + 1
GAACCCCAUCCUACCCGCAACAAUAAGGAAUCAACGGCAACAACAACAGCAGCGGCCACAUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG
........((((.............))))......(....)..........(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -25.22)
>DroEre_CAF1 29613 109 + 1
UAGCCCCAUGCUACCCGCAACAAUAAGGAAACAACAGCAACAACUACAGCAGCGGCCACUUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG
..((....(((.....))).......(....)....)).............(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -27.10)
>DroYak_CAF1 28233 106 + 1
UAACCCCAUCCUACCCACAACAAUAAGGAAACAACAGCAACAAC---AACAGCGAACAGAUCAUGGAGUCUACGUCCACUCCGAGGCUAAUUAAGUUAUUGGCUGCACG
........((((.............))))...............---....((..........((((((........)))))).(((((((......)))))))))... ( -17.52)
>consensus
GAACCCCAUCCUACCCGCAACAAUAAGGAAACAACGGCAACAACAACAGCAGCGGCCACAUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG
...................................................(((((((...(((((((..........)))))))(((.....)))...)))))))... (-19.04 = -19.48 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:44 2006