| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,742,867 – 2,742,972 |
| Length | 105 |
| Max. P | 0.682464 |
| Location | 2,742,867 – 2,742,972 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 86.70 |
| Mean single sequence MFE | -25.81 |
| Consensus MFE | -20.68 |
| Energy contribution | -21.94 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2742867 105 + 27905053 UCGCUCCGAGGGACUUCCCUUCGAUCAAUUGCGUGGAAAUGUCACAAAGUCAACACUUAAUUGCACCGCCCUAAUUGAGGCCAAAAAGCUUUAAGUAAUCAAUUA ..(.((.(((((....))))).)).).(((((((((...(((....((((....))))....))))))).....(((((((......))))))))))))...... ( -22.10) >DroSec_CAF1 18721 104 + 1 ACA-ACCGAGGGACUUCCCUUCGAUCAAUUGCGUGGAAAUGUCACAAAGUCAACACGUAAUUGUCCCGCCCUAAUUGAGGCCAAAAAGCUUUAAUUAAUCAAUUA ...-..((((((.....))))))..((((((((((....((.(.....).)).))))))))))........((((((((((......))))))))))........ ( -28.40) >DroSim_CAF1 19451 104 + 1 GCA-GCCGAGGGACUUGCCUUCGAUCAAUUGCGUGGAAAUGUCACAAAGUCAACACGUAAUUGUCCCGCCCUAAUUGAGGCCAAAAAGCUUUAAUUAAUCAAUUA ((.-..((((((.....))))))..((((((((((....((.(.....).)).))))))))))....))..((((((((((......))))))))))........ ( -29.80) >DroEre_CAF1 19929 103 + 1 GCA--CUGAGGGACUUCCCUUCGAUCAAUUGCGUGGAAAUGUCACAAAGUCAACACGUAAUUGUCCCGCUCUAAUUGAGGCCAAAAAGCUUUAAUUAAUCAAUUA ((.--..(((((....))))).((.((((((((((....((.(.....).)).))))))))))))..))..((((((((((......))))))))))........ ( -29.80) >DroYak_CAF1 18667 104 + 1 GCA-ACUGAGGGACUUCGCUUCGAUCAAUUGCGUGGAAAAGUCACAAAGUCAACACGUAAUGUUCCUUCCCUAAUUGAGGCCAAACAGCUUUGAUUAAUCAACUA ...-...(((((((.(((...)))...((((((((..................)))))))))))))))...((((..((((......))))..))))........ ( -23.77) >DroAna_CAF1 17653 98 + 1 -------AAGGUUCUUCCCUCCUAUCAGUUGCGUGGAAGUGUCACAAAGUCAGCACGUAAUUGAACAACAUUAAUUGAGGCCGAAAAGCUUUUAUUAAUCAAUUA -------.(((.........))).(((((((((((((..(......)..))..))))))))))).....((((((.(((((......))))).))))))...... ( -21.00) >consensus GCA__CCGAGGGACUUCCCUUCGAUCAAUUGCGUGGAAAUGUCACAAAGUCAACACGUAAUUGUCCCGCCCUAAUUGAGGCCAAAAAGCUUUAAUUAAUCAAUUA ......((((((.....))))))..((((((((((..................))))))))))........((((((((((......))))))))))........ (-20.68 = -21.94 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:43 2006