| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,720,165 – 21,720,285 |
| Length | 120 |
| Max. P | 0.575503 |
| Location | 21,720,165 – 21,720,285 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.72 |
| Mean single sequence MFE | -44.44 |
| Consensus MFE | -29.54 |
| Energy contribution | -29.27 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.51 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21720165 120 - 27905053 UAGCCCUUUGCUGCUGCCACGAGGGCAUCUCUGGUGGCGGAGGAGCAUGCUCAUUGGCCCUGCCUCCGCGAUCGGGUACCCGACCAAUCACAUGCUUUUGGAUUUUGGAAGCCGUAUUCU ..((((((.((....))...)))))).......((((((((((.....(((....)))....)))))))(.((((....)))).)...)))..(((((..(...)..)))))........ ( -42.70) >DroVir_CAF1 866 120 - 1 CGGCACGCUGCUGUUGCCAGGAAGGCAUCUCUGGCGGCGGUGGCGCGUGCUCAUUGGCGCGUCCACCGCGAUCCGGCACAUUGCCAAUCACAUGUUUUUCUAUCUUCGAAGCCGUAUUCU ((((.(((((..(.((((.....)))).)..)))))(((((((.(((((((....))))))))))))))(((..(((.....))).))).....................))))...... ( -49.50) >DroPse_CAF1 872 120 - 1 UUGCCCUUUGCUGUUGCCAAGAGGGCAUCUCUGGUGGGGGCGGAGCAUGCUCAUUGGCUCGUCCGCCGCGAUCCGGGACACUGCCAAUCAUAUGCUUUUGGAUCUUCGAGGCAGUAUUCU .((((((((((....))..))))))))((((.(((.(.((((((.(..(((....)))..))))))).).))).)))).((((((......((.(....).))......))))))..... ( -45.40) >DroWil_CAF1 716 120 - 1 UGGCUCGUUGCUGCUGCCAUGAUGGCAUCUCAGGCGGAGGGGGAGCAUGCUCAUUGGCUCUGCCACCACGAUCAGGCACUCUGCCAAUCACAUGUUUCUGUAUCUUUGAUGUCGUGUUCU ((((..((....)).))))..((((((((..(((....(.(((((((((...((((((..((((..........))))....))))))..))))))))).).)))..))))))))..... ( -37.90) >DroMoj_CAF1 866 120 - 1 CGGCACGUUGCUGUUGCCAGGAUGGCAUCUCUGGCGGUGGUGGAGCAUGCUCAUUGGCACGUCCACCACGAUCAGGCACACUUCCAAUCACAUGCUUCUCUAUCUUAGAUGCCGUAUUCU .((((((....)).))))...(((((((((((((..((((((((.(.((((....)))).)))))))))..))))(((..............)))...........)))))))))..... ( -40.74) >DroAna_CAF1 872 120 - 1 UGGCUCGCUGCUGUUGCCAUGAGGGCAUUUCCGGUGGCGGAGGAGCGUGCUCAUUAGCACGACCUCCUCGAUCUGGUACGCUGCCAAUCACAUGCUUCUGUAUCUUGGAGGCGGUGUUUU ((((.(((..(((.((((.....))))....)))..)))((((((((((((....))))))..)))))).............))))..(((.((((((((.....))))))))))).... ( -50.40) >consensus UGGCACGUUGCUGUUGCCAGGAGGGCAUCUCUGGCGGCGGAGGAGCAUGCUCAUUGGCACGUCCACCGCGAUCAGGCACACUGCCAAUCACAUGCUUCUGUAUCUUCGAAGCCGUAUUCU (((((((((((((.((((.....))))....))))))))).((((((((...(((((((..(((..........)))....)))))))..))))))))............))))...... (-29.54 = -29.27 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:19 2006