Locus 808

Sequence ID 3R_DroMel_CAF1
Location 2,738,602 – 2,738,709
Length 107
Max. P 0.905365
window1290

overview

Window 0

Location 2,738,602 – 2,738,709
Length 107
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.04
Mean single sequence MFE -40.88
Consensus MFE -30.09
Energy contribution -31.83
Covariance contribution 1.74
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.74
SVM decision value 1.04
SVM RNA-class probability 0.905365
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2738602 107 - 27905053
-------UGGCUUAAAACUGGUAACGGGACUGCCCAUAUGGCAUGCGCACUUUGUGCAUGUGUGUGUGU-----UUUGUCCACUGCGAGUGUGUGCGAGGCUAAGUGGGCUGGGCUUAA
-------.((((((...(((....)))....((((((.((((.(((((((....((((.(((..((...-----..))..)))))))...)))))))..)))).))))))))))))... ( -40.50)
>DroSec_CAF1 14457 112 - 1
-------UGGCUUAAAACUGGUAACGGGACUGCCCAUGUGGCAUGCGCAUUUAGUGCAUGUGUGCGUGUGAAAUUGUGUCCACUGCGAGUGUGUGCGAGGCUAAGUGGGCUGGGCUUAA
-------.((((((...(((....)))....((((((.((((.(((((((....((((.(((..(..(......)..)..)))))))...)))))))..)))).))))))))))))... ( -41.60)
>DroSim_CAF1 15138 112 - 1
-------UGGCUUAAAACUGGUAACGGGACUGCCCAUGUGGCAUGCGCAUUUAGUGCAUGUGUGUGUGUGAAAUUGUGUCCACUGCGAGUGUGUGCGAGGCUAAGUGGGCUGGGCUUAA
-------.((((((...(((....)))....((((((.((((.(((((((....((((.(((..(..(......)..)..)))))))...)))))))..)))).))))))))))))... ( -39.80)
>DroEre_CAF1 15675 112 - 1
-------UGGCUUAAAACUGGUAACGGGUCUGCCCAUAUGGCAUGCGCACUUUGCACAUGUGUGUGUGUGGAAGUGUGUUCACUGCGAGUGUGUGCGUGGCUAAGUGGGCUGGGCUUAA
-------.((((((...(((....)))....((((((.((((((((((((((..(((((....)))))..))((((....))))......)))))))).)))).))))))))))))... ( -46.90)
>DroYak_CAF1 14303 112 - 1
-------UGGCUUAAAACUGGCAACGGGUCUGCCCAUAUGGCAUGCGCACUUUGUGCAUUUGUGUGUGCAGAAGUGUGUCCACUGCGAGUGUGUGCGUAGCUAAGUGGGCUGGGCUUAA
-------.((((((...(((....)))....((((((.((((.(((((((.....(((((((((((..((......))..))).))))))))))))))))))).))))))))))))... ( -48.70)
>DroMoj_CAF1 55788 104 - 1
UCGUUGACGACU-UAAACAGGUAACGGUACUGCCCAUAUGCCAUGCGCAAU-CCCG--UUUCAUUGUG--CGAGUAUGU-----GUGUGUGUGUGCU----AAAGUGGGCUGGGCUUGA
((((((....((-.....)).))))))....(((((...(((.((((((((-....--....))))))--))((((..(-----......)..))))----......)))))))).... ( -27.80)
>consensus
_______UGGCUUAAAACUGGUAACGGGACUGCCCAUAUGGCAUGCGCACUUUGUGCAUGUGUGUGUGUGAAAGUGUGUCCACUGCGAGUGUGUGCGAGGCUAAGUGGGCUGGGCUUAA
........((((((...(((....)))....((((((.((((..((((((....((((.(((..(..(......)..)..)))))))...))))))...)))).))))))))))))... (-30.09 = -31.83 +   1.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:42 2006