Locus 8047

Sequence ID 3R_DroMel_CAF1
Location 21,623,927 – 21,624,017
Length 90
Max. P 0.753617
window12950

overview

Window 0

Location 21,623,927 – 21,624,017
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.52
Mean single sequence MFE -21.07
Consensus MFE -16.31
Energy contribution -16.67
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.77
SVM decision value 0.48
SVM RNA-class probability 0.753617
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21623927 90 + 27905053
GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA-----------------AAUCGCAAAGCAA--CCAA
....((((((((...........(((((....)))))((((.......))))..))))))))...(((.....-----------------........)))..--.... ( -20.92)
>DroSec_CAF1 113306 90 + 1
GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA-----------------AUUCGCAAAGCAA--CCAA
....((((((((...........(((((....)))))((((.......))))..))))))))...(((.....-----------------........)))..--.... ( -20.92)
>DroSim_CAF1 109851 90 + 1
GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA-----------------AUUCGCAAAGCAA--CCAA
....((((((((...........(((((....)))))((((.......))))..))))))))...(((.....-----------------........)))..--.... ( -20.92)
>DroEre_CAF1 105515 85 + 1
GUUUCAGAGGAAAACGCCCCGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAG-----------------AAUCGCAAAACA-------
((((((((((((...........(((((....)))))((((.......))))..))))))))...((......-----------------....)).)))).------- ( -19.90)
>DroYak_CAF1 110060 90 + 1
GUUGCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCGAUUCCUUUGUCCGCUGUCAA-----------------AAUCGCAAAACAA--CCAA
(((((((.((......))))).......((((((((.((((.......))))(((......))).))))))))-----------------..........)))--)... ( -22.00)
>DroAna_CAF1 92199 109 + 1
GUUUGAGAGGCAGCUGCCUCGGAAACUGUUGACAGUUGCCUAAUUAAAAGUCAAUUCCUUUAUCUACCGCCUUGGCCCCAUUCCUCUUUCAGCCACAAUACCUCCCCAA
....(((((((((((((..((....).)..).)))))))))...............................((((...............))))......)))..... ( -21.76)
>consensus
GUUCCAGAGGAAAACGCCCUGAAAACUGUUGACAGUUGCCUAAUUAAAAGGCAAUUCCUUUGUCCGCUGUCAA_________________AAUCGCAAAACAA__CCAA
((..((((((((...........(((((....)))))((((.......))))..))))))))...)).......................................... (-16.31 = -16.67 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:12 2006