Locus 8029

Sequence ID 3R_DroMel_CAF1
Location 21,568,151 – 21,568,264
Length 113
Max. P 0.731121
window12922

overview

Window 2

Location 21,568,151 – 21,568,264
Length 113
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.90
Mean single sequence MFE -33.18
Consensus MFE -24.08
Energy contribution -24.08
Covariance contribution 0.00
Combinations/Pair 1.23
Mean z-score -1.40
Structure conservation index 0.73
SVM decision value 0.42
SVM RNA-class probability 0.731121
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21568151 113 - 27905053
CUU-----AAUUUUUUCCGCAGUUGCCGACCAGCGUCCAGUGAAAAACCAUACUCAAAUCGAAAAGACCACAACGCCCAGUGAGCAGCCGGAUUCCGGCUUUAUUGCACUGGUGGUCA
...-----..........((....)).(((((((((...(((..........................))).))))((((((...((((((...))))))......))))))))))). ( -30.47)
>DroVir_CAF1 45188 115 - 1
CUU-GC--ACUUCAAUUCACAGUUGCCGAACGGCGUCCCGUGAAGAACCAAACACACAUCGAUCAAACCACAGCGCCCAGUCCGCAGCCGGACUCGGGCUUCAUAGCGCUUGUGGUUA
...-..--.......(((((...((((....))))....))))).....................(((((((((((((((((((....)))))).))))........)).))))))). ( -36.10)
>DroPse_CAF1 51978 118 - 1
AUUCAAACAUCUGCAUCCACAGUUGCCGAGCAGCGUCCAGUGAAAAAUCAAACACAAAUCGAAAAGACCACAGCGCCCAGUCCGCAACCGGAUUCGGGCUUCAUAGCGCUGGUGGUCA
.(((.................(((((...))))).....(((..........))).....)))..(((((((((((((((((((....)))))).))))........))).)))))). ( -33.60)
>DroMoj_CAF1 43404 108 - 1
----------UGCCCUCCACAGUUGCCGAGCGGAGUCCAGUGAACAACCAAACGCACAUCGAUCAAACCACAGCGCCCAGCCCGCAGCCGGACUCGGGCUUCAUAGCGCUAGUGGUUA
----------((..((((.(.........).))))..))(((............)))........(((((((((((..((((((.((.....)))))))).....))))).)))))). ( -33.60)
>DroAna_CAF1 38586 113 - 1
ACC-----AUUUCUGUCCACAGUUGCCGACCAUCGUCCUGUGAAGAACCAGACCCAAAUCGAACAGACCACUGCGCCCAGCCCACAGCCGGACUCUGGCUUCAUUGCGCUGGUGGUCA
...-----..((((...(((((....((.....))..))))).))))..................(((((((((((.........((((((...)))))).....)))).))))))). ( -31.74)
>DroPer_CAF1 52252 118 - 1
AUUCAAACAUCUGCAUCCACAGUUGCCGAGCAGCGUCCAGUGAAAAACCAAACACAAAUCGAAAAGACCACAGCGCCCAGUCCGCAACCGGAUUCGGGCUUCAUAGCGCUGGUGGUCA
.(((.................(((((...))))).....(((..........))).....)))..(((((((((((((((((((....)))))).))))........))).)))))). ( -33.60)
>consensus
AUU_____AUUUCCAUCCACAGUUGCCGAGCAGCGUCCAGUGAAAAACCAAACACAAAUCGAAAAGACCACAGCGCCCAGUCCGCAGCCGGACUCGGGCUUCAUAGCGCUGGUGGUCA
.................(((.((((.....)))).....))).......................(((((((((((..((((((.((.....)))))))).....))))).)))))). (-24.08 = -24.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:45 2006