Locus 8021

Sequence ID 3R_DroMel_CAF1
Location 21,535,786 – 21,535,892
Length 106
Max. P 0.665923
window12910

overview

Window 0

Location 21,535,786 – 21,535,892
Length 106
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -35.35
Consensus MFE -26.52
Energy contribution -27.25
Covariance contribution 0.73
Combinations/Pair 1.20
Mean z-score -1.16
Structure conservation index 0.75
SVM decision value 0.28
SVM RNA-class probability 0.665923
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21535786 106 - 27905053
UUCCAUGAUCUUGA---UCUUUUUAGGAAGCCACACAUGUUCGCCCGAGGAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG
.....(((((....---(((.....))).((((..((...((((((((....((((....))))))))))))(((((((........)))))))))..)).))))))). ( -35.10)
>DroSec_CAF1 33569 106 - 1
UUCCAUGAUCUUUA---UCUUUUUAGGAAGCCAAACGUGUUCGCCCGAGGAGUUUGCUUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG
.....(((((..((---(((.....((((..((..(((.(((((((((....((((....))))))))))))).)))..))..))))........)))))...))))). ( -36.12)
>DroEre_CAF1 23791 106 - 1
UUCCUUGAUCUCGA---UCUUUUUAGGAAGCUUAACAUGCUCGCCCGAGCAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG
.....(((((....---(((.....))).((...((((.(((((((((((((.....))))...))))))))(((((((........))))))).).))))))))))). ( -38.30)
>DroWil_CAF1 9733 106 - 1
UAUCAUUAUGUAUU---GCUUUUCAGAGACAAAAACAUGUUCGCCCGAAGAGUUUACUUGCAAAUCGGGCGAUGGUCAAUGUAUACCACUUGCCUGGAUGUGUGAUCAG
......(((((.((---((((....))).)))..))))).((((((((.(((....))).....))))))))(((((.(..(((.(((......))))))..)))))). ( -28.40)
>DroYak_CAF1 26499 106 - 1
AUCCUUGAUCUUGA---UCUUUUUAGGAGCCCAAACGUGUUCGCCCGAGCAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG
.....((((((((.---.(((.....)))..))).(((.(((((((((((((.....))))...))))))))).))).(..(((((.........)))))..)))))). ( -39.40)
>DroMoj_CAF1 12691 108 - 1
C-CCAACAUCUAUUUGUAUAUUGCAGAGAGCAAAACGUGCUCCCCGGACGAGUUCGCUUGCAAGAGCGGCGAGGGCGAGUGUAUUCCUCUUGCCUGGAUGUGCGAUCAG
.-...(((((((...((...((((((.(((((.....)))))..((((....)))).))))))..))((((((((.(((....))))))))))))))))))........ ( -34.80)
>consensus
UUCCAUGAUCUUGA___UCUUUUUAGGAAGCCAAACAUGUUCGCCCGAGGAGUUUGCCUGCAAGUCGGGCGAGGGCGAGUGCAUUCCCUUGUCCUGGAUGUGCGAUCAG
.....(((((.........................(((.(((((((((...((......))...))))))))).))).(..(((.((........)))))..)))))). (-26.52 = -27.25 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:33 2006