Locus 8011

Sequence ID 3R_DroMel_CAF1
Location 21,486,280 – 21,486,370
Length 90
Max. P 0.905765
window12895

overview

Window 5

Location 21,486,280 – 21,486,370
Length 90
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 77.40
Mean single sequence MFE -37.04
Consensus MFE -19.22
Energy contribution -20.06
Covariance contribution 0.84
Combinations/Pair 1.21
Mean z-score -2.14
Structure conservation index 0.52
SVM decision value 1.04
SVM RNA-class probability 0.905765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21486280 90 - 27905053
CCGUGAACGCCAGGGAUACGGCGGGACGCAAAUCCACACCAUUGCAUUUCGCAGCGGGUAAGU-GA------GAUGCGAUGCGGUUAGAUCCCAUCC---------
.((....))...(((((..(((.(((......)))...((((((((((((((.........))-))------))))))))).))))..)))))....--------- ( -30.50)
>DroSec_CAF1 6010 90 - 1
CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGU-GA------GAUGCGAUGCGGUUAGAUCCCAUCC---------
.((....))...(((((..((((((((....)))).))))((((((((((((.........))-))------))))))))........)))))....--------- ( -41.20)
>DroSim_CAF1 6017 90 - 1
CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGU-GA------GAUGCGAUGCGGUUAGAUCCCAUCC---------
.((....))...(((((..((((((((....)))).))))((((((((((((.........))-))------))))))))........)))))....--------- ( -41.20)
>DroEre_CAF1 6127 93 - 1
CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGUUGU------GAUUU-----GCUGUGAUGCCAU--UCUAUUCUC
.((....))...((.((((((((((((....)))).))))...(((..(((((((......)))))------))..)-----)).)).)).))..--......... ( -37.50)
>DroAna_CAF1 5784 90 - 1
CCGUGAAUGCCCGGGACACGGCUGGUCGCAAGUCCACGCCUCUCCACUUUGCAGCGGGUAAGU-GUCCCCAGGAUGCG-----U-CAGGAUGCACGA---------
.(((.....((.(((((((((((((.(....).))).)))..(((.((....)).)))...))-)))))..))..(((-----(-....))))))).--------- ( -34.80)
>consensus
CCGUGAACGCCAGGGAUACGGCGGGACGCAAGUCCACGCCAUUGCAUUUCGCAGCGGGUAAGU_GA______GAUGCGAUGCGGUUAGAUCCCAUCC_________
.((....))...(((((..((((((((....)))).)))).((((.....))))..................................)))))............. (-19.22 = -20.06 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:18 2006