Locus 8009

Sequence ID 3R_DroMel_CAF1
Location 21,477,120 – 21,477,230
Length 110
Max. P 0.980806
window12893

overview

Window 3

Location 21,477,120 – 21,477,230
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.62
Mean single sequence MFE -33.94
Consensus MFE -32.38
Energy contribution -32.82
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -2.55
Structure conservation index 0.95
SVM decision value 1.87
SVM RNA-class probability 0.980806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21477120 110 + 27905053
----------AAAACGUCACCUGAUGUAGGCCGUGCCCAGUGCUUAUUUGUUGCAUUUUCGAAAUACAAAUUGCACUAGUCCCGGCCUGCAAUGAGUGUCGCAGUCGACGAUCUACACAG
----------....((((..(((.(((((((((.(.(.(((((..((((((..(......)....)))))).))))).).).)))))))))..(.....).)))..)))).......... ( -35.10)
>DroVir_CAF1 1700 100 + 1
----------AAAACGUCACCUGAUGUAGGUCGUGCCUGGUGCUUAUUUGUUGUUAUGCGAAAAUCCAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAGCCAACG----------
----------....((.((((...(((((((((.(.(((((((..((((((((.....))).....))))).))))))).).)))))))))..).))).)).........---------- ( -33.80)
>DroGri_CAF1 1881 109 + 1
----------AAAACGUCACCUGAUGUAGGUCGUGCCUGGUGCUUAUUUGUUGUUAUGUGAAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAAACAACAAACAACA-AC
----------....((.((((...(((((((((.(.(((((((..((((((.(((.......))))))))).))))))).).)))))))))..).))).))................-.. ( -35.30)
>DroWil_CAF1 5218 110 + 1
UAUCUUUAAAAAUACGUCACAUGAUGUAGACCGUGCCUGGUGCUUAUUUGUUGCUAUUUAAAUAUACAAAUUGCACUAGUCCCGGCCUGCAGUAAGUGUCGCAAACAACU----------
..............((.(((.((.(((((.(((.(.(((((((..((((((..............)))))).))))))).).))).))))).)).))).)).........---------- ( -30.64)
>DroMoj_CAF1 1673 100 + 1
----------AAAACGUCACCUGAUGUAGGUCGUGCCUGGUGCUUAUUUGUUGUUAUGCGAAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAAACAACG----------
----------....((.((((...(((((((((.(.(((((((..((((((.(((.......))))))))).))))))).).)))))))))..).))).)).........---------- ( -35.30)
>DroAna_CAF1 2366 109 + 1
----------AAAACGUCACCUGAUGUAGGCCGUGCCCGGUGCUUAUUUGUUAC-UUUUGGAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCAAAGGCAGCUAUCUUCACUG
----------...(((((....)))))((((((.(.(..((((..((((((...-..........)))))).))))..).).)))))).((((((((((.....)))......))))))) ( -33.52)
>consensus
__________AAAACGUCACCUGAUGUAGGCCGUGCCUGGUGCUUAUUUGUUGCUAUGUGAAAAUACAAAUUGCACUAGUCCCGGCCUGCAGUGAGUGUCGCAAACAACG__________
..............((.(((....(((((((((.(.(((((((..((((((..............)))))).))))))).).)))))))))....))).))................... (-32.38 = -32.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:16 2006