| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 506,800 – 506,891 |
| Length | 91 |
| Max. P | 0.965071 |
| Location | 506,800 – 506,891 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.74 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -14.29 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 506800 91 + 27905053 AGCGAGUAAAACAGCGUCAAAUUGCAUCUAAAUUAAAUAAAAUUAAGUUGACAUGCAAGCUGUGUUGAGUCG-CUGGCUGAAC-----------U-CAACUCGA-- ..(((((...(((((......((((((...((((.(((...))).))))...)))))))))))(((.(((..-...))).)))-----------.-..))))).-- ( -21.40) >DroVir_CAF1 46130 101 + 1 -ACUAGUGAAACGGCGUCAAAUUGCAUUUAAAUUGAAUGAAAUUAAUUUGACAUGCAAGUUGUGUUGAGUCGACUCUCUG-ACUUGUCUGUCUGU-CUGCCCGA-- -......((..(((((.(((.(((((((((((((((......))))))))).)))))).))))))))..))(((.....(-((......))).))-).......-- ( -23.70) >DroMoj_CAF1 42318 80 + 1 GAUGAGUGAAACGCCGUCAAAUUGCAUUUAAAUUGAAUGAAAUUAAUUUGACAUGCAAGCUGUGUUA-----------------------UUUUC-CCGCCCAA-- ...(((...(((((.((....(((((((((((((((......))))))))).)))))))).))))).-----------------------..)))-........-- ( -15.60) >DroAna_CAF1 36895 94 + 1 ACCGAGUGAAACAGCGUCAAAUUGCAUUUAAAUUGAAUGAAAUUAAUUUGACAUGCAAGCUGUGUUGAGUCG-CCGCCUCAAC-----------UUCAACUCGACU ..(((((((((((((......(((((((((((((((......))))))))).)))))))))))((((((...-....))))))-----------))).)))))... ( -29.30) >consensus AACGAGUGAAACAGCGUCAAAUUGCAUUUAAAUUGAAUGAAAUUAAUUUGACAUGCAAGCUGUGUUGAGUCG_CUG_CUG_AC___________U_CAACCCGA__ ..(((((....(((((.((..(((((((((((((((......))))))))).))))))..)))))))((........))...................)))))... (-14.29 = -15.10 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:31 2006