Locus 7990

Sequence ID 3R_DroMel_CAF1
Location 21,418,436 – 21,418,546
Length 110
Max. P 0.536070
window12864

overview

Window 4

Location 21,418,436 – 21,418,546
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -34.73
Consensus MFE -21.17
Energy contribution -22.40
Covariance contribution 1.23
Combinations/Pair 1.29
Mean z-score -1.55
Structure conservation index 0.61
SVM decision value 0.00
SVM RNA-class probability 0.536070
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21418436 110 - 27905053
GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAUGUACUUGGAGACACGCAAAGGUCCCUGGUACAAGCAAAAGAGUCGUAAGGUAAGU
((((.((.((((((((((((.....)))))))))))).(((((.((........((((((.((.(((.(.....)))))).)))))).))....))))))).)))).... ( -38.20)
>DroVir_CAF1 14782 104 - 1
GCCUGGCAGUGACUCGCGAUGAUGUGUGGUUCACAAAAAAUCCUGCUGCAUGUGAAUAUGUUGAGACGCGUCAGGGU------UAUAAGGUGCCCGUUCGCAAGGUAAGC
((((((((((((..((((......))))..))))....(((((((.(((.(.(.((....)).).).))).))))))------)......)))).(....).)))).... ( -27.90)
>DroSec_CAF1 26353 110 - 1
GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAUGUACUUGGAGACGCGCAAAGGUCCCUGGUACAAGCAAAUGAGUCGUAAGGUAAGU
((((.((.((((((((((((.....)))))))))))).((((((.....((...((((((.((.(((.(.....)))))).))))))))....)))))))).)))).... ( -38.80)
>DroSim_CAF1 11151 110 - 1
GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAUGUACUUGGAGACGCGCAAAGGUCCCUGGUACAAGCAAAUGAGUCGUAAGGUAAGU
((((.((.((((((((((((.....)))))))))))).((((((.....((...((((((.((.(((.(.....)))))).))))))))....)))))))).)))).... ( -38.80)
>DroEre_CAF1 26366 110 - 1
GUCUGGCUUUCGUCAAGGACGAUGUGUUCUUUACCAAGGACUCUGCGUACUAUGAGUACUUGGAGACGCGCAAAGGACCCUGGUACAAGCUGAAAAGUCGUAAGGCAAGU
.((.((((((((((...))))).........(((((.((.((.(((((((.....))))..(....)..))).))..)).))))).)))))))...(((....))).... ( -31.20)
>DroYak_CAF1 11606 110 - 1
GCCUGGCUUUGGUCAAGGACGAUGUGUUCUUCACCAAGGAUUCGGCUUACUAUGAGUACUUGGAGACGCGCAAAGGACCCUGGUACAGGCAGAAGAGUCGCAAGGUAAGU
((((((((..((((((((((.....))))))..(((((.(((((........))))).)))))............))))..))).))))).......((....))..... ( -33.50)
>consensus
GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAAGUACUUGGAGACGCGCAAAGGUCCCUGGUACAAGCAAAAGAGUCGUAAGGUAAGU
((((.((.(((((.((((((.....)))))).))))).((((((.....).....(((((.((.(((.(.....)))))).)))))........))))))).)))).... (-21.17 = -22.40 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:44 2006