Locus 799

Sequence ID 3R_DroMel_CAF1
Location 2,718,793 – 2,718,883
Length 90
Max. P 0.558567
window1273

overview

Window 3

Location 2,718,793 – 2,718,883
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 88.33
Mean single sequence MFE -31.32
Consensus MFE -24.02
Energy contribution -23.86
Covariance contribution -0.16
Combinations/Pair 1.23
Mean z-score -1.52
Structure conservation index 0.77
SVM decision value 0.05
SVM RNA-class probability 0.558567
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2718793 90 - 27905053
GGGACGUAUUUGGUUAGGGGCAACCAUUUGCCGGCGAUUCGACAGAGUCGGGAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA
..........(((((..((....)).((((((((((((((....)))))((.(......).)))))))))))...........))))).. ( -30.70)
>DroSec_CAF1 29071 90 - 1
GGGAUGUAUUUGGUUAGGGGCAACCAUUUGCCGACGAUCCGAGAGAGUCGGCAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA
..........(((((..((....)).(((((((((((..(....)..))((((......)))))))))))))...........))))).. ( -34.00)
>DroSim_CAF1 30269 90 - 1
GGGACGUAUUUGGUUAGGGGCAACCAUUUGCCGGCGAUCCGAGAGAGUCGGCAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA
..........(((((..((....)).(((((((((((..(....)..))((((......)))))))))))))...........))))).. ( -33.40)
>DroEre_CAF1 30313 89 - 1
AGGAUGUAUUUGUUUUGGGGCAACCAUUUGCCGGCGAUCCGACAGAGUCGGCGUGCACUUGCCGUCGGCGGAGCGGAAAUUA-AACCAUA
.((..((.((((((((.((....))....((((((((..(....)..))((((......)))))))))))))))))).))..-..))... ( -29.80)
>DroYak_CAF1 30110 90 - 1
AGAAUGUAUUGGCUUUGGAGCAAAUGGUUGCUUGCGAUCCGACAGAGUCGGCGUGCACUUGCCGUCGGCGGAGCGGAAAUGAAAACCGCC
..........(((.(((((((((....)))))).)))((((.....(((((((.((....)))))))))....))))..........))) ( -28.70)
>consensus
GGGAUGUAUUUGGUUAGGGGCAACCAUUUGCCGGCGAUCCGACAGAGUCGGCAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA
....(((..........((....)).((((((((((((.(....).)))((((......))))))))))))))))............... (-24.02 = -23.86 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:26 2006