| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,379,129 – 21,379,229 |
| Length | 100 |
| Max. P | 0.960860 |
| Location | 21,379,129 – 21,379,229 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.03 |
| Mean single sequence MFE | -28.49 |
| Consensus MFE | -14.77 |
| Energy contribution | -14.94 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21379129 100 + 27905053 -UUGUUGUUCUGCGGCAUUAUGAUUGCAAAAUAAACAAUGCCAAGGCAGAAAUCAGCAUUCAGCA--GCAC----------ACAGCAAC--ACAAAGGCUGAAAGC----AAACCGAAC- -.((...((((((((((((...(((....)))....))))))...))))))..))((.((((((.--((..----------...))..(--.....))))))).))----.........- ( -25.80) >DroPse_CAF1 89376 116 + 1 -GUGCUGGUAUGGGGCAUGAUGAUUGCAAAACAAACAAUGCCAAGGCACAAAUCAGCAUUCAGUA--ACAACAAAAGCGUAAUAGUAGCGCCCCAAAGCUGCAAACCCCAAACCCCAUU- -(((..(((.(((((.......(((((...........(((....))).......((.((..((.--...))..))))))))).(((((........)))))...))))).))).))).- ( -27.10) >DroSim_CAF1 70018 100 + 1 -UUGUUGUUCUGCGGCAUUAUGAUUGCAAAAUAAACAAUGCCAAGGCAGAAAUCAGCAUUCAGCA--GCAC----------ACAGCAAC--ACAAAGGCUGAAAGC----AAGCCGAAC- -(((((((.((((((((((...(((....)))....))))))...((........)).....)))--)...----------))))))).--.....((((......----.))))....- ( -26.70) >DroEre_CAF1 73177 103 + 1 GUUGUUGUUCUGCGGCAUUAUGAUUGCAAAAUAAACAAUGCCAAGCCAGAAAUCAGCAUUCAGCAGCGCAC----------ACAGUAAC--ACAAAGGCUGAAAGC----AACCCGAAC- ((((((((.((((((((((...(((....)))....))))))..((.........)).....)))).))..----------.((((...--......))))..)))----)))......- ( -23.00) >DroYak_CAF1 72809 101 + 1 -UUGUUGUUCUGCGGCAUUAUGAUUGCAAAAUAAACAAUGCCAAGGCAGAAAUCAGCAUUCAGCU--GCAC----------ACAGUAAC--ACAAAGGCUGAAUGC----AAACCGAACC -.((...((((((((((((...(((....)))....))))))...))))))..))((((((((((--....----------........--.....))))))))))----.......... ( -29.93) >DroPer_CAF1 112352 116 + 1 -GUGCGGGUAUGGGGCAUGAUGAUUGCAAAACAAACAAUGCCAAGGCAGAAAUCAGCAUUCAGUA--ACAACAAAAGCGUAAUAGUAGCGCCCCAAAGCUGCAAGCCCCAAACCCCAUU- -(((.((((.((((((....(((.(((...........(((....)))(....).))).)))...--.................(((((........)))))..)))))).))))))).- ( -38.40) >consensus _UUGUUGUUCUGCGGCAUUAUGAUUGCAAAAUAAACAAUGCCAAGGCAGAAAUCAGCAUUCAGCA__GCAC__________ACAGUAAC__ACAAAGGCUGAAAGC____AACCCGAAC_ ..(((((.((((.(((((..((.(((.....))).)))))))....))))...)))))((((((.................................))))))................. (-14.77 = -14.94 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:21 2006