Locus 797

Sequence ID 3R_DroMel_CAF1
Location 2,716,568 – 2,716,683
Length 115
Max. P 0.901418
window1268

overview

Window 8

Location 2,716,568 – 2,716,683
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -19.96
Consensus MFE -19.01
Energy contribution -19.37
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.11
Structure conservation index 0.95
SVM decision value 1.02
SVM RNA-class probability 0.901418
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2716568 115 + 27905053
AAGAGGGCAAGGAAAAACACAGAAAGCGAAA-----CGAAAACUAAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
..........................(((((-----((((..........((((.((((((((((((..............)))))))))...))).)))).)))))))))......... ( -17.64)
>DroSec_CAF1 26811 115 + 1
AAGAGGGCAAGGAAAAACACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
...((((((((........(((....((...-----))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... ( -19.54)
>DroSim_CAF1 27996 115 + 1
AAGAGGGCAAGGAAAAACACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
...((((((((........(((....((...-----))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... ( -19.54)
>DroEre_CAF1 27794 115 + 1
AAGAGGGCAAGGAAAAGGACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
...((((((((........(((....((...-----))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... ( -19.54)
>DroYak_CAF1 27589 120 + 1
AACAGGGCAAGGAAAAAGACAGAAAGCGAAACGAAACGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
..(((((((((........(((....((........))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))))......... ( -23.84)
>DroAna_CAF1 27010 115 + 1
AAGUCGGCAAAGAAACACACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
((((((((((...............(((...-----((............))..))).(((((((((..............))))))))).....))))))))))............... ( -19.64)
>consensus
AAGAGGGCAAGGAAAAACACAGAAAGCGAAA_____CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC
...((((((((........(((....((........))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... (-19.01 = -19.37 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:21 2006