| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,360,506 – 21,360,597 |
| Length | 91 |
| Max. P | 0.727417 |
| Location | 21,360,506 – 21,360,597 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -13.27 |
| Energy contribution | -14.77 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21360506 91 + 27905053 CCAACCGCAACGAGGCCAAUCUCACCUGAGAUUGCCAUGAAAUUCUGUAGC---UAAAGUCAAAUUAGGA-------AAGCCACAACGAUGGCGGGCAUAA ....((((..((.(((.((((((....))))))))).........(((.((---(....((.......))-------.))).))).))...))))...... ( -24.50) >DroPse_CAF1 64306 101 + 1 UACACCGCAACGAGGCCAAUCUCACCUGAGAUUGCCAUGAAAAUCUGUUUCUGUUUCAGUCAAAUUAGAAAAAAGAAAAGCCAGAAAGGAAAAAAAAAGAA ....((.......(((.((((((....))))))))).......(((((((((.((((..........))))..)))))...))))..))............ ( -20.00) >DroSim_CAF1 50390 91 + 1 CCAACCGCAACGAGGCCAAUCUCACCUGAGAUUGCCAUGAAAUUCUGUAGC---UAAAGUCAAAUUAGGA-------AAGCCACAACGAUGGCGGGCAUAA ....((((..((.(((.((((((....))))))))).........(((.((---(....((.......))-------.))).))).))...))))...... ( -24.50) >DroEre_CAF1 52784 91 + 1 CCAACCGCAACGAGGCCAAUCUCACCUGAGAUUGCCAUGAAAUUCUGUAGC---UAAAGUCAAAUUAGGA-------AAGCCACAACGAUGGCGGGCAAAA ....((((..((.(((.((((((....))))))))).........(((.((---(....((.......))-------.))).))).))...))))...... ( -24.50) >DroYak_CAF1 53038 91 + 1 CCAACCGCAACGAGGCCAAUCUCAUUUGAGAUUGCCAUGAAAUGCUGUAGC---UAAAGUCAAAUUAGGA-------AAGUCACAACGAUGGCGGGCAAAA ....((((..((.(((.((((((....))))))))).(((...((....))---.....)))........-------.........))...))))...... ( -23.50) >DroPer_CAF1 86221 98 + 1 UACACCGCAACGAGGCCAAUCUCACCUGAGAUUGCCAUGAAAUUCUGUUUCUGUUUCAGUCAAAUUAGAAA-AAGAAAAGCCAGAAAGGAAAA--AAAGAA ....((.......(((.((((((....)))))))))......((((((((((.((((..........))))-.)))))...))))).))....--...... ( -22.40) >consensus CCAACCGCAACGAGGCCAAUCUCACCUGAGAUUGCCAUGAAAUUCUGUAGC___UAAAGUCAAAUUAGGA_______AAGCCACAACGAUGGCGGGCAAAA ....((((.....(((.((((((....)))))))))......(((((..................))))).....................))))...... (-13.27 = -14.77 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:08 2006