Locus 796

Sequence ID 3R_DroMel_CAF1
Location 2,715,626 – 2,715,729
Length 103
Max. P 0.727686
window1267

overview

Window 7

Location 2,715,626 – 2,715,729
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.69
Mean single sequence MFE -26.45
Consensus MFE -19.33
Energy contribution -19.80
Covariance contribution 0.47
Combinations/Pair 1.09
Mean z-score -3.60
Structure conservation index 0.73
SVM decision value 0.42
SVM RNA-class probability 0.727686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2715626 103 - 27905053
AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA-----------------AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC
.....(((((((((((((((.........(((-----------------((((........))))))).........)))))))))...................(....)..)))))). ( -26.77)
>DroSec_CAF1 25817 103 - 1
AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA-----------------AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC
.....(((((((((((((((.........(((-----------------((((........))))))).........)))))))))...................(....)..)))))). ( -26.77)
>DroSim_CAF1 27001 103 - 1
AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA-----------------AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUGUAGUAAAAAGGCAACAAAAGGAUC
........((((((((((((.........(((-----------------((((........))))))).........))))))))))))...(((((.((......)).)))))...... ( -28.57)
>DroEre_CAF1 26888 103 - 1
AAUUUAUCUUUGUUUUCUGCAGAACCAGUAGA-----------------AGCUGAGCAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAGAAGGCAACAAAAGGAUC
.....(((((((((((((((........((((-----------------((((........))))))))........)))))))))...................(....)..)))))). ( -26.79)
>DroYak_CAF1 26635 103 - 1
AAUUUAUCUUUGUUUUCUGCAGAAGCCGAAGA-----------------AGCCGAGGAGAAAGCUUCUGGAACAAAAGCGGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC
.....(((((((((((((((.....((..(((-----------------(((..........)))))))).......)))))))))...................(....)..)))))). ( -22.80)
>DroAna_CAF1 26186 120 - 1
AAUUUAUCUUUGUUUUCUGCACAACCAGAAGAACUCAAGCUGAAGCUGAAGCUGGAGAGGAAGCUUCUGGAACAAAAGCGAAGCGCAAAAAGUUUAUAAUAAAAAGGCAACAAAAGGAUC
.....((((((......(((....(((((((..(((.((((........))))...)))....))))))).......(((...)))....................)))....)))))). ( -27.00)
>consensus
AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA_________________AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC
.....(((((((((((((((....(((((((................................))))))).......)))))))))...................(....)..)))))). (-19.33 = -19.80 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:20 2006