Locus 795

Sequence ID 3R_DroMel_CAF1
Location 2,715,385 – 2,715,502
Length 117
Max. P 0.995858
window1266

overview

Window 6

Location 2,715,385 – 2,715,502
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.59
Mean single sequence MFE -43.10
Consensus MFE -38.64
Energy contribution -38.58
Covariance contribution -0.05
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.90
SVM decision value 2.62
SVM RNA-class probability 0.995858
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2715385 117 - 27905053
CUU--CCGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
...--((((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... ( -43.80)
>DroSec_CAF1 25587 113 - 1
------CGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
------(((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))((((.....(....).....))))... ( -41.80)
>DroSim_CAF1 26762 117 - 1
CUU--CCGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
...--((((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... ( -43.80)
>DroEre_CAF1 26650 117 - 1
CUU--CCGUGGA-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
...--((((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... ( -43.80)
>DroYak_CAF1 26393 119 - 1
CUCCGCCGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
....(((((.((-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).))))))))))........)))))................. ( -45.70)
>DroAna_CAF1 25869 118 - 1
CUU--CUGGGUUCUGGGGUGUAUUGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
...--....(((((..(((..((((((.((((((((((((.((((.((....)).)))).))....))))))))))..((((...(((...)))..))))))))))..))).)))))... ( -39.70)
>consensus
CUU__CCGUGGG_CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA
.....((((((..(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... (-38.64 = -38.58 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:19 2006