Locus 7939

Sequence ID 3R_DroMel_CAF1
Location 21,307,746 – 21,307,838
Length 92
Max. P 0.813913
window12792

overview

Window 2

Location 21,307,746 – 21,307,838
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 96.38
Mean single sequence MFE -32.03
Consensus MFE -29.54
Energy contribution -29.43
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.08
Structure conservation index 0.92
SVM decision value 0.66
SVM RNA-class probability 0.813913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21307746 92 + 27905053
UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACGGGCUCCUUCUCCUCGUCGUUGGCUGAACUGUUUGCUACUG
........((((.((((((((..((((((((....((((.....))))...(((.......)))..))))))))..)))))))).))))... ( -31.50)
>DroSim_CAF1 36434 92 + 1
UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACAGGCUCCUUCUCCUCCUCGUUGGCUGAGCUGUUUGCUACUG
........((((.((((((((..(((((((.....((((.....))))...(((........)))..)))))))..)))))))).))))... ( -26.70)
>DroYak_CAF1 37856 92 + 1
UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACGGGCUCCUUAUCCUCGUCGUUGGCUGAACUGUUGGCUACUG
........(((((((((((((..((((((((....((((.....))))...(((.......)))..))))))))..)))))))))))))... ( -37.90)
>consensus
UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACGGGCUCCUUCUCCUCGUCGUUGGCUGAACUGUUUGCUACUG
........((((.((((((((..((((((((....((((.....))))...(((........))).))))))))..)))))))).))))... (-29.54 = -29.43 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:37 2006