| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,713,446 – 2,713,537 |
| Length | 91 |
| Max. P | 0.811256 |
| Location | 2,713,446 – 2,713,537 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.50 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -18.85 |
| Energy contribution | -18.13 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2713446 91 + 27905053 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCUAAUCAAGAGAUUCCUU-UUU------------------------CUUUGGCUAAUCCCCGUUUUGGCCU---- ............(((..(((((....)))))..))).......((((.....)))).......-...------------------------....((((((........)))))).---- ( -22.80) >DroSec_CAF1 23761 92 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCUAAUCAAGAGAUUCCUUUUUU------------------------CUUUGGCUAAUCCCUGUUUUGGCUU---- ............(((..(((((....)))))..))).......((((.....))))...........------------------------....((((((........)))))).---- ( -20.20) >DroSim_CAF1 24894 92 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCUAAUCAAGAGAUUCCUUUUUU------------------------CUUUGGCUAAUCCCCGUUUUGGCCU---- ............(((..(((((....)))))..))).......((((.....))))...........------------------------....((((((........)))))).---- ( -22.80) >DroEre_CAF1 24811 91 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCCAAUCAAGAGAUUCCUC-UUU------------------------CUUUGGCUAAUCCCCGUUUGGGCCC---- (((.........(((..(((((....)))))..)))..........(((..(((((....)))-)).------------------------..))))))....(((....)))...---- ( -22.90) >DroYak_CAF1 24629 91 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUGCUCCAAUCAAGAGAUGCCUU-UUC------------------------CUUUGGCUAAUCCCCGUUUUGGUUC---- (((((.......(((..(((((....)))))..)))....)))))((((....((...(((..-...------------------------....)))...))......))))...---- ( -22.30) >DroAna_CAF1 24265 119 + 1 ACCCACUUCCUUUGGUGGCGCUCAAAAGCGUCGCCAUUAAUUACUUCAAUCAAAAGAUUCCUU-UUUAUUCGGCUCUCUGGAGGUGUUUGGCUCUGGUUAAUCUCCAUUUCGGCCAUGCC ...(((((((..((((((((((....)))))))))).........(((((.(((((....)))-)).))).))......)))))))...(((..((((..(........)..)))).))) ( -35.40) >consensus AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCCAAUCAAGAGAUUCCUU_UUU________________________CUUUGGCUAAUCCCCGUUUUGGCCU____ ............((((((((((....)))))))))).......(((.......))).......................................((((((........))))))..... (-18.85 = -18.13 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:17 2006