Locus 7928

Sequence ID 3R_DroMel_CAF1
Location 21,255,083 – 21,255,178
Length 95
Max. P 0.548244
window12770

overview

Window 0

Location 21,255,083 – 21,255,178
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 90.29
Mean single sequence MFE -16.20
Consensus MFE -13.82
Energy contribution -13.86
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.28
Structure conservation index 0.85
SVM decision value 0.03
SVM RNA-class probability 0.548244
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21255083 95 - 27905053
UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG
......(((((....)))))((((((((...............(((....)))((((.((((............)))).)))).))))))))... ( -17.00)
>DroSec_CAF1 80106 83 - 1
UACACAAU------------GCCAUUCUGAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG
....(((.------------(((((((((..............(((....)))((((.((((............)))).)))))))))))))))) ( -19.20)
>DroSim_CAF1 82823 95 - 1
UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG
......(((((....)))))((((((((...............(((....)))((((.((((............)))).)))).))))))))... ( -17.00)
>DroYak_CAF1 89664 95 - 1
UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAAGCGAGCAGCGAAACAGAAUGGCUUG
......(((((....)))))((((((((..(((........))).......(((((.(((((........)))))....)))))))))))))... ( -19.10)
>DroAna_CAF1 74281 92 - 1
UACACAAAGCUCUUC---AUGCAAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACGAAGCAGCGAAACAGAAUGGUUCG
........((.....---..))......................(((...((((((.((.((............)))).))))))..)))..... (  -8.70)
>consensus
UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG
....................((((((((...............(((....)))((((.((((............)))).)))).))))))))... (-13.82 = -13.86 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:17 2006