Locus 7921

Sequence ID 3R_DroMel_CAF1
Location 21,246,669 – 21,246,761
Length 92
Max. P 0.722040
window12758

overview

Window 8

Location 21,246,669 – 21,246,761
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.80
Mean single sequence MFE -16.71
Consensus MFE -13.49
Energy contribution -14.02
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.81
SVM decision value 0.40
SVM RNA-class probability 0.722040
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21246669 92 + 27905053
CUCGAGCGAUUUCGAGAUUGGUUGCCC-UAACAACAA--AA-AAAAGCUAACUUGAGAAAAGAAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA
((((((....)))))).(((((((((.-.........--..-..(((....)))............)))))))))..............-----....... ( -16.77)
>DroSec_CAF1 71499 91 + 1
CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACAACAA--A--AAAAGCUAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA
((((((....)))))).(((((((((.-.........--.--...((....)).............)))))))))..............-----....... ( -16.33)
>DroSim_CAF1 73848 93 + 1
CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACAACAA--AAAAAAAGCUAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA
((((((....)))))).(((((((((.-.........--...........................)))))))))..............-----....... ( -15.49)
>DroEre_CAF1 75545 88 + 1
CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACA-------AAAAAACCCAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA
((((((....)))))).(((((((((.-.....-------.......((....))...........)))))))))..............-----....... ( -17.45)
>DroYak_CAF1 80955 95 + 1
CUCGAGCAAUUUCGAGAUUGGUUGCCC-UAACAACAACAAAAAAAACCAAACUGGAGAAAAGAAAAGGUAACCAAGCAUUAAAUUAAAG-----ACUUUAA
((((((....)))))).(((((((((.-......................................)))))))))..............-----....... ( -15.43)
>DroAna_CAF1 66916 90 + 1
CUCGAACAGUUUCAACACUGGUUGCCCCCAACAGCAGCAGGGAA-----------AGGAGAAGAAAGGUAACCAAGCAUUAAAUUAAAGCCGAAGCUUUCC
...(((.((((((.....(((((((((((..........)))..-----------...........)))))))).((...........)).))))))))). ( -18.81)
>consensus
CUCGAGCAAUUUCGAGAUUGGUUGCCC_UAACAACAA__AAAAAAAGCUAACUGGAGAAAAGGAAAGGUAACCAAGCAUUAAAUUAAAG_____ACUUUAA
((((((....)))))).(((((((((........................................))))))))).........(((((......))))). (-13.49 = -14.02 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:06 2006