| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,712,066 – 2,712,185 |
| Length | 119 |
| Max. P | 0.658399 |
| Location | 2,712,066 – 2,712,185 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.04 |
| Mean single sequence MFE | -34.59 |
| Consensus MFE | -28.97 |
| Energy contribution | -29.77 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2712066 119 + 27905053 AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGUUGGAAAAACAGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGCCGUACAGGCGAUAAAU-UUCUACCUGUCAAUAG ((((............(((((((..........(((((((((((.....))).))))))))(((((....))))).))))))).((((.....))))......-))))............ ( -30.50) >DroSec_CAF1 22439 119 + 1 AGAACCCAAAUCAGCCAUUGACCCCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUAUAGGCGAUAAAU-UUCUACCUGUCAAUAG .............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))(.(((((.((.....-.))..))))))..... ( -35.40) >DroSim_CAF1 23560 119 + 1 AGAACCCAAAUCAGCCAUUGACCCCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUACAGGCGAUAAAU-UUCUACCUGUCAAUAG .............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))(.(((((.((.....-.))..))))))..... ( -37.30) >DroEre_CAF1 23493 120 + 1 AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGGUGGGAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGAACAGGCGAUAAAUUUUCUACCUGUCAAUAG .............((((((((((..........(((((((((((......)))))))))))(((((....))))).)))))))..)))((.((((.((.......))..))))))..... ( -37.20) >DroYak_CAF1 23290 120 + 1 AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGAAAAUCAGUGGGAAAACUGGUUUUCCAACUCAUUUCAGCUUGGUCAGUCCGGCGAACAGGCCAUACAUUUUCUACCUGUCAAUAG .............((((((((((....((((.((((((((((((......)))))))))))).)).......))..)))))))..)))((.((((..............))))))..... ( -35.35) >DroAna_CAF1 21401 120 + 1 AGAACCCAAAUCAGCCAUUGACCUCACGCAGCUGGGAAAAGGCUGGAAAAACUGGUUUUCCAACUCAUUUGAGCCUGGUCAGGCCGGCAUGCAGGCGAUAAAUUUUCUACCUGUCAAUAG ((((.....(((.(((..((....)).((((((((((..(((((.(((....(((....))).....))).)))))..))...))))).))).)))))).....))))............ ( -31.80) >consensus AGAACCCAAAUCAGCCAUUGACCUCAUGCAGCUGGGAAAUCGGUGGAAAAACUGGUUUUCCAACUCAUUUGAGUUUGGUCAGUCCGGCGUACAGGCGAUAAAU_UUCUACCUGUCAAUAG .............((((((((((.........((((((((((((......)))))))))))).(((....)))...)))))))..)))..(((((..............)))))...... (-28.97 = -29.77 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:16 2006