| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,109,885 – 21,110,000 |
| Length | 115 |
| Max. P | 0.631509 |
| Location | 21,109,885 – 21,110,000 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.44 |
| Mean single sequence MFE | -29.41 |
| Consensus MFE | -19.36 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631509 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21109885 115 + 27905053 UCCGGUUGCUCAGGAAGAACUCAAAACAGCCUUUGCUAAACUGGCCAAAUGGCAUGCAAUUAGCAUGAAAUACAUUAAGGAGGUAGGU---UUAAUUUAGGUAAUUAUGGGAGUUCUA (((.........)))(((((((......((((..(.((((((.(((.((((.(((((.....))))).....)))).....))).)))---))).)..))))........))))))). ( -29.74) >DroSec_CAF1 18947 116 + 1 UCCGGCUGCUCAGGAGGAACUCAAAACAGCCUUUUCCAAACUGGCCAAAUGGCAUGCAAUUAGCAUGAAAUUCAUUAAGGAGGUAGGU--UUUAAUUUAGGUAUUUAUGGGAGUUCUA (((.........)))(((((((......((((.....(((((.(((......(((((.....)))))...(((.....)))))).)))--))......))))........))))))). ( -27.74) >DroSim_CAF1 19422 115 + 1 ACCGGUUGCUCAGGAGGAACUCAAAACAGCCUUUGCCAAACUGGCCAAAUGGCAUGCAAUUAGCAUGAAAUUCAUUAAGGAGGUAGGC---UUAAUUUAGGUAUUUAUGGGAGUUCUA .((.........)).(((((((....(.(((((((((.....)))..(((..(((((.....)))))..)))......)))))).)((---(((...)))))........))))))). ( -28.10) >DroEre_CAF1 17753 115 + 1 UCCAGUUGCUCAGGAGGAGCUCAAAACAGCCUUCUCCAAACUGGCCAAAUGGCAUGCAGUGAGCAUGAAAUUCAUAAAGGAGGUGAGA---UUAACUCAAUGAAUCAUUAGAGUUUCA ......(((((.(((((((((......)).)))))))..(((((((....)))...)))))))))((((((((.(((..((..((((.---....)))).....)).))))))))))) ( -35.20) >DroYak_CAF1 19435 114 + 1 UCCAGUUACUCAGGAGGAACUCAAAACCACAUUCACCAAAUUGGCCAAAUGGCAUGCAGUUAGCAUGAAAUUUAUUAGGGAGGUGAGU---UUAACUCAAU-AUUUAUGAGAGUUUCA (((.........)))(((((((.(((((((.(((.((......(((....)))((((.....))))...........)))))))).))---))...(((..-.....)))))))))). ( -27.30) >DroPer_CAF1 12793 115 + 1 UCCGGUUAGGGAGGAGGAACUAUGCAGAGCCUACUCGAAACUGGCCAAAUGGCAUGCCAUCAGCAUGAAACUGCUCAAUGAGGUGAGCUCUUUAAUCUG-CAAACUAUUGA--CUCAA ...((((((.(((.(((..((....))..))).)))....)))))).((((((((((.....)))))(((..(((((......)))))..)))......-....)))))..--..... ( -28.40) >consensus UCCGGUUGCUCAGGAGGAACUCAAAACAGCCUUCUCCAAACUGGCCAAAUGGCAUGCAAUUAGCAUGAAAUUCAUUAAGGAGGUAAGU___UUAAUUUAGGUAAUUAUGGGAGUUCUA (((.........)))(((((((......((((((.........(((....)))((((.....))))............))))))(((........)))............))))))). (-19.36 = -19.25 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:06 2006