Locus 788

Sequence ID 3R_DroMel_CAF1
Location 2,706,665 – 2,706,757
Length 92
Max. P 0.545943
window1256

overview

Window 6

Location 2,706,665 – 2,706,757
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 85.63
Mean single sequence MFE -27.37
Consensus MFE -18.28
Energy contribution -19.50
Covariance contribution 1.22
Combinations/Pair 1.12
Mean z-score -3.08
Structure conservation index 0.67
SVM decision value 0.02
SVM RNA-class probability 0.545943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2706665 92 + 27905053
UUGCUUGCCAGCUCUU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UGCGCUGUCAGCAGCAGAA-------AAUGCAGAAGAGCAG
..........((((((-(--((.......((((...((((((((((......))))))..)--)))((((....)))).)))-------)...))))))))).. ( -29.80)
>DroSec_CAF1 16803 99 + 1
UUGCUUGCCAGCUCUU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UUCGCUGUCAGCAGCAGAAAAUGGAAAAUGCAGAAGAGCAG
..........((((((-(--((....((((((..((((..((((((......))))))...--...((.....)).)))).))))))......))))))))).. ( -29.30)
>DroSim_CAF1 17882 99 + 1
UUGCUUGCCAGCUCUU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UUCGCUGUCAGCAGCAGAAAAUGGAAAAUGCAGAAGAGCAG
..........((((((-(--((....((((((..((((..((((((......))))))...--...((.....)).)))).))))))......))))))))).. ( -29.30)
>DroEre_CAF1 17668 92 + 1
UUGCUUGCCAGCUCCU-C--CGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU--UGCGCUGUCAGCAGCAUAC-------AAUGCAGAAGAGCAG
..........((((..-.--.((((....)))).(((((.((((((......))))))...--...((((....))))....-------..)))))..)))).. ( -23.40)
>DroYak_CAF1 17848 92 + 1
UUGCUUGCCAGCUCCU-C--UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUGGACUU--UGCGCUGUCAGCAGCAGAA-------AAUGCUGAAGAGCAG
.(((((..((((...(-(--(((((....))))...((((((((((......))))))..)--)))((((....))))))).-------...))))..))))). ( -26.80)
>DroAna_CAF1 16621 93 + 1
UUCCACGCCAACUUCUUCCUCGAAAACUAUUCGACUGCAAUCUAAAAACAGAUUUAGACUCGGUUGGCUGUCAGCAGCAGAA-------AG----GAGGAGCGC
.....(((.....(((((((...........((((((...((((((......))))))..))))))((((....))))....-------))----)))))))). ( -25.60)
>consensus
UUGCUUGCCAGCUCCU_C__UGAAAACUAUUUCACUGCAAUCUAAAAACAGAUUUAGACUU__UGCGCUGUCAGCAGCAGAA_______AAUGCAGAAGAGCAG
..........((((((.....((((....)))).(((((.((((((......))))))........((((....)))).............))))))))))).. (-18.28 = -19.50 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:09 2006