| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,703,863 – 2,703,956 |
| Length | 93 |
| Max. P | 0.634206 |
| Location | 2,703,863 – 2,703,956 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -16.33 |
| Consensus MFE | -10.70 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2703863 93 - 27905053 UUU---CUACCC-----U-AAUCCAAUCCGAGCGAGUCUCUCAACUGAGACGCGCCAUGUCAUACCAUUUUUUACCCACAGCAACUUUGCAUCCUCCCCCAG- ...---......-----.-..........(.(((.(((((......))))).))))........................(((....)))............- ( -15.20) >DroSec_CAF1 13874 92 - 1 UUU----UACCC-----C-CAUCCAAUCCGAGUGAGUCUCUCAACUGAGACGCGCCAUGUCACACCAUUUUUUACCCACAGCAACUUUGCAUCCUCCCCCAG- ...----.....-----.-..........(.(((.(((((......))))).))))........................(((....)))............- ( -13.30) >DroEre_CAF1 14803 96 - 1 UUUCUCUUACUC-----C-AAUCCAAUCCGAGCGGGUCUCUCAACUGAGACGCGCCAUGUCAAACCAUUUUUUACACACAGCAACUUUGCAUCCUCCCCCAG- ............-----.-..........(.(((.(((((......))))).))))........................(((....)))............- ( -16.80) >DroYak_CAF1 14907 96 - 1 UUUUUCUUACUC-----C-AAUCCAGUCCGAGCGGGUCUCUCAACUGAGACGCGCCAUGUCAACCCAUUUUUUACCAACAGCAACUUUGCAUCCUCCCCCAG- ............-----.-..........(.(((.(((((......))))).))))........................(((....)))............- ( -16.80) >DroAna_CAF1 14255 102 - 1 UUUCCCUUACGCAAUGGC-CCCCCAAUCGGAGGGAGUCUCUCAACUGAGACGCGUCGUGUUAAACCAUUUUUUAUUCGCAGCAACUUUGCAUCCCCCCCUUGG ..........((....))-...((((..((.(((((((((......)))))(((..(((..((.....))..))).))).(((....))).))))))..)))) ( -24.60) >DroPer_CAF1 43172 103 - 1 AUUCUCUUAUGCAAUGGCUCUCCAAAUCCUAGCAGGUCUCUCAACUGAAACGCUUCAUGUCAAACGAUUUUUUAUUUGCAGCCACCCGCCACCCACCUCCCGG ..........((..((((............(((...((........))...)))...((.((((..(....)..))))))))))...)).............. ( -11.30) >consensus UUUCUCUUACCC_____C_AAUCCAAUCCGAGCGAGUCUCUCAACUGAGACGCGCCAUGUCAAACCAUUUUUUACCCACAGCAACUUUGCAUCCUCCCCCAG_ ...............................(((.(((((......))))).))).........................(((....)))............. (-10.70 = -10.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:06 2006