| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,008,143 – 21,008,250 |
| Length | 107 |
| Max. P | 0.779070 |
| Location | 21,008,143 – 21,008,250 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 94.94 |
| Mean single sequence MFE | -40.07 |
| Consensus MFE | -35.23 |
| Energy contribution | -35.40 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21008143 107 + 27905053 ACGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUAUACUCGUGGUCGUCCGUAGU--- ..........(((((...((((((((((...(((....)))((((((((.....))))))))...))))))...))))((((((........)))))))).)))...--- ( -39.20) >DroSec_CAF1 12830 107 + 1 AUGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUGUACUCGUGGUCGUCCGUAGU--- .....(((..((((((((((...((....((((.......(((((((((.....)))))))))...((((.....))))))))...)).)))).)))))).)))...--- ( -40.60) >DroSim_CAF1 12902 107 + 1 ACGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUGUACUCGUGGUCCUCCGUAGU--- .....(((.((.((((((((...((....((((.......(((((((((.....)))))))))...((((.....))))))))...)).)))).)))))).)))...--- ( -39.30) >DroEre_CAF1 12889 107 + 1 ACGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUGUACUCGUGGUCGUCCGUAGU--- .....(((..((((((((((...((....((((.......(((((((((.....)))))))))...((((.....))))))))...)).)))).)))))).)))...--- ( -40.60) >DroYak_CAF1 14697 110 + 1 ACGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUGUACUCGUGGUCGUCCGUAGUCCG ..........(.(((.(((((.(((.....((((......(((((((((.....)))))))))....))))....)))((((((........)))))))))))..)))). ( -41.50) >DroAna_CAF1 13155 103 + 1 AUGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUGUAGUCCUAGC----CAGAGU--- ..................((((((((((.((((.......(((((((((.....)))))))))...((((.....))))))))...)))).))).))----).....--- ( -39.20) >consensus ACGAAAUGAAGCGACCCGGGCAGGCUGCUUGGCUUUUUAGUGGCAAGGAUAUGUUUCUUGCCAAUGCGGCCCCAUGCCGGCCAUCUGUACUCGUGGUCGUCCGUAGU___ (((...............((((((((((...(((....)))((((((((.....))))))))...))))))...))))((((((........))))))...)))...... (-35.23 = -35.40 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:17 2006