Locus 784

Sequence ID 3R_DroMel_CAF1
Location 2,696,498 – 2,696,609
Length 111
Max. P 0.594474
window1252

overview

Window 2

Location 2,696,498 – 2,696,609
Length 111
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -18.23
Consensus MFE -13.28
Energy contribution -14.07
Covariance contribution 0.79
Combinations/Pair 1.21
Mean z-score -1.75
Structure conservation index 0.73
SVM decision value 0.12
SVM RNA-class probability 0.594474
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2696498 111 - 27905053
ACCUAUAGGUGAUGCUGUAUACUUGCUUUUAAGUAGGACUAAAGUAUACAGAAAAUAUUUAAUAAAAACGCACU----CAUGAAAAAUCUAA-AAAUUAAUGAAUCAAGGGAAAAU
.(((.((((((...((((((((((.(((......)))....))))))))))....))))))............(----(((...........-......))))....)))...... ( -18.13)
>DroSec_CAF1 6588 115 - 1
ACCUAUAGGUGAUGCUGUAUGCUCACAUUUAAAAAGAACAAGAGUAUAUA-AAAAUAUUACAUAAAAACAGACUUAGUCAUAGUAAACAAAACAAAUUAUGGAAUCAAGGGUAAAU
((((....((((((.(((((((((.................)))))))))-....))))))................(((((((...........)))))))......)))).... ( -16.93)
>DroSim_CAF1 6600 116 - 1
ACCUAUAGGUGAUGCUGUAUGCUCACAUUUAAAAAGAACAAGAGUAUAUAGAAAAUAUUACAUAAAAACAGACUUAGUCAUAGUAAAUAAAACAAAUUAUGGAAUCAAGGGUAAAU
((((....((((((((((((((((.................))))))))))....))))))................(((((((...........)))))))......)))).... ( -19.63)
>consensus
ACCUAUAGGUGAUGCUGUAUGCUCACAUUUAAAAAGAACAAGAGUAUAUAGAAAAUAUUACAUAAAAACAGACUUAGUCAUAGUAAAUAAAACAAAUUAUGGAAUCAAGGGUAAAU
.(((....((((((((((((((((...(((.....)))...))))))))))....))))))................(((((((...........))))))).....)))...... (-13.28 = -14.07 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:05 2006