Locus 7822

Sequence ID 3R_DroMel_CAF1
Location 20,958,332 – 20,958,449
Length 117
Max. P 0.548896
window12612

overview

Window 2

Location 20,958,332 – 20,958,449
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.63
Mean single sequence MFE -36.87
Consensus MFE -19.95
Energy contribution -19.82
Covariance contribution -0.14
Combinations/Pair 1.35
Mean z-score -2.21
Structure conservation index 0.54
SVM decision value 0.03
SVM RNA-class probability 0.548896
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20958332 117 + 27905053
AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU---CCAUUCCCCAACAUGCGUCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAUUAUGUGACAUGUAGCUCCGGCC
......((((((((..((((..(((.(((((.(((((..---.(((........))).))))).....((((....))))..............))))).)))..))))..)))))))). ( -39.20)
>DroPse_CAF1 161 120 + 1
AUUACUGCCGGAGUGCUAUGCAGCAGGAUCCAUCCACUUCGGCAAUUCCACAUAAUUCAUCAAACAAAAUCAAUUAUGGAAUGAAUUCUGGACAGGAAUAUACAGCAUGCAGCCCUUAUC
.....((((((((((((....))).(((....))))))))))))(((((.((.(((((((....((.((....)).))..))))))).))....))))).....((.....))....... ( -27.40)
>DroEre_CAF1 17 117 + 1
AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU---CCAUUCCCCAACAUGCGGCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAUUAUGUGACAUGUAGCUCCGGCC
......((((((((..((((..(((.(((((........---.(((........)))(((((..((..((((....)))).))..)))))....))))).)))..))))..)))))))). ( -39.40)
>DroYak_CAF1 17 117 + 1
AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU---CCAUUCCCCAGCAUGCGGCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAUUAUGUGACAUGUAGCUCCGGCC
......((((((((..((((..(((.(((((...(....---.).....(((((....(.....)...((((....))))......)))))...))))).)))..))))..)))))))). ( -40.10)
>DroAna_CAF1 17 120 + 1
AUUACUGCCGGGGUGCUAUGCAGCAGACAUCCGCUGCUUCGUCAAUUCCACAGCAUUCGUCCAACAAAGUCAACUAUGGGAUGAAUGCCGGGCAGGAAUAUGUGACAUGCAGCUCCGGUC
......((((((((((...(((((.(....).)))))...(((((((((.(.((((((((((..((.((....)).)))))))))))).)....)))))...))))..))).))))))). ( -47.70)
>DroPer_CAF1 21 120 + 1
AUUACUGCCGGAGUGCUAUGCAGCAGGAUCCAUCCACUUCGGCAAUUCCACAUAAUUCAUCAAACAAAAUCAAUUAUGGAAUGAAUUCUGGACAGGAAUAUACAGCAUGCAGCCCUUAUC
.....((((((((((((....))).(((....))))))))))))(((((.((.(((((((....((.((....)).))..))))))).))....))))).....((.....))....... ( -27.40)
>consensus
AUUACUGCCGGAGCGCCAUGCAGCAGAAUCCCUCGACUU___CAAUUCCACAACAUGCGUCGAACAAACUCAACUAUGGGAUGAACGCUGGCCAGGAAUAUGUGACAUGCAGCUCCGGCC
......((((((((..((((..(((...(((.............(((((............................)))))............)))...)))..))))..)))))))). (-19.95 = -19.82 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:34 2006