Locus 7820

Sequence ID 3R_DroMel_CAF1
Location 20,949,894 – 20,949,991
Length 97
Max. P 0.640120
window12610

overview

Window 0

Location 20,949,894 – 20,949,991
Length 97
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 82.32
Mean single sequence MFE -26.70
Consensus MFE -16.56
Energy contribution -17.92
Covariance contribution 1.36
Combinations/Pair 1.25
Mean z-score -1.90
Structure conservation index 0.62
SVM decision value 0.22
SVM RNA-class probability 0.640120
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20949894 97 + 27905053
CGUUUUUUCUGCGUGGAAAAUGCUGCCCUGUAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAACGCAACCCUUGGCAACAAGAUUGAUUACAUAUCGC------
.((((((((((.(..(...((((((((.......)))))))).)..)......))))))))))((....((((....))))...(((.....)))))------ ( -31.10)
>DroSec_CAF1 13437 95 + 1
CGUUUUUCCUGCGUGGAAAAUGCUGCCAUGUAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAACGCAACCCUUGGCAACAAGAUU-ACAA-AUAUCGC------
((((((..(((.(..(...((((((((((...)))))))))).)..)......)))..)))))).....((((....))))...-....-.......------ ( -29.20)
>DroSim_CAF1 13302 96 + 1
CGUUUUUCCUGCGUGGAAAAUGUUGCAUUGUAAUGGCGGCAUGCUGCGAAAUAUAGAGGAAACGCAACCCUUGGCAACAAGAUU-ACAACAUAUCGC------
((((((..(((((..(...(((((((.........))))))).)..)).....)))..)))))).....((((....))))...-............------ ( -25.10)
>DroEre_CAF1 13332 99 + 1
CGAUUUUCCUGAGUGGAAUAUGCUAGUCUGCAAUGGCGACAUGCUGUAAAAUAUAGUGAAAAUGGAACCCAUGGCAACAAGAUU-AC---AUAUCGCUUAAUU
.........((((((..(((((.((((((((.((((...(((((((((...))))))....)))....)))).))....)))))-))---))))))))))... ( -21.00)
>DroYak_CAF1 13362 99 + 1
CUACUUUCCUGUGUGGAAAAUGCUUGCCUACAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAAUGGAAGCCUUGGCAACAAGAUU-AC---AUAUCGCUUGCUC
(((.((((((((((.(...(((((.(((......))))))))....)...)))))).)))).)))((((.(((....)))(((.-..---..))))))).... ( -27.10)
>consensus
CGUUUUUCCUGCGUGGAAAAUGCUGCCCUGUAAUGGCGGCAUGCUGCAAAAUAUAGAGAAAACGCAACCCUUGGCAACAAGAUU_AC_A_AUAUCGC______
((((((..(((..((.(..((((((((.......))))))))..).)).....)))..)))))).....((((....))))...................... (-16.56 = -17.92 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:32 2006