| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,693,702 – 2,693,801 |
| Length | 99 |
| Max. P | 0.574074 |
| Location | 2,693,702 – 2,693,801 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -21.61 |
| Consensus MFE | -15.35 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2693702 99 - 27905053 AGGAC-CUCUAAUAAAGCAGAAUGCGAAUAAAAAGGAUAAAAA-----------A-GACUUCGUUUCGCAGAAGGACACAGGAAGAGUUAACGUAACUCUUUCGCAAUUUAC .....-..........((....((((((....(((..(.....-----------)-..)))...))))))..........((((((((((...))))))))))))....... ( -20.50) >DroPse_CAF1 33834 107 - 1 AC--U-UUCCAAUAAAGCGAAAUGCGAAUAAAAAGGAUAAAAAACGGUCGAA-AA-GGCUUCGAUUCGCGGAAGGACGUUAGAAGAGUUAACGUAACUCUUUCGCAAUUUAC ..--.-............(((.(((((...............((((((((((-..-...))))))((.(....)))))))..((((((((...))))))))))))).))).. ( -22.20) >DroEre_CAF1 4387 99 - 1 AGGAC-CUCAAAUAAAGCGAAAUGCGAAUAAAACGGAUAAAAA-----------A-GGCUUUGGUUCGCAGAAGGACACAGGAAGAGUUAACGUAACUCUUUCGCAAUUUAC .....-..........((....(((((((....(.........-----------.-)......)))))))..........((((((((((...))))))))))))....... ( -20.00) >DroYak_CAF1 3842 99 - 1 AGGAC-CUCUAAUAAAGCGGAAUGCGAAUAAAAUGGAUAAAAA-----------A-GGCUUCGGUUCGCAGAAGGACAUAGGAAGAGUUAACGUAACUCUUUCGCAAUUUUC .....-..........((....(((((((.....((.......-----------.-..))...)))))))..........((((((((((...))))))))))))....... ( -20.30) >DroAna_CAF1 3448 101 - 1 AGGUCUCUCUAAUAAAGCAAAACGCGAAUAAAAAGAAUAAAAA-----------ACGGAUUGGCUUCGGGGAAGGACCAGGGAAGAGUUAACGUAACUCUUUCGUCAUUUAC .((((..(((....((((....((...................-----------.)).....))))...)))..))))..((((((((((...))))))))))......... ( -24.25) >DroPer_CAF1 33814 108 - 1 AC--U-UUCCAAUAAAGCGAAAUGCGAAUAAAAAGGAUAAAAAACGGUCGAAAAA-GGCUUCGAUUCGCGGAAGGACGUUAGAAGAGUUAACGUAACUCUUUCGCAAUUUAC ..--.-............(((.(((((...............((((((((((...-...))))))((.(....)))))))..((((((((...))))))))))))).))).. ( -22.40) >consensus AGGAC_CUCUAAUAAAGCGAAAUGCGAAUAAAAAGGAUAAAAA___________A_GGCUUCGAUUCGCAGAAGGACAUAGGAAGAGUUAACGUAACUCUUUCGCAAUUUAC ................((....(((((((..................................)))))))..........((((((((((...))))))))))))....... (-15.35 = -15.55 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:00 2006