| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,923,313 – 20,923,433 |
| Length | 120 |
| Max. P | 0.541126 |
| Location | 20,923,313 – 20,923,433 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.22 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -18.77 |
| Energy contribution | -19.39 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20923313 120 + 27905053 UGGUGUUUUGUACUCGCUGCCCAGGCGGUCACACUAAAAAUACCAAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU (((((((((......(((((....))))).......)))))))))...(.((...(((......(((((...(((((((...........)))))))..)))))....)))..))).... ( -32.52) >DroSec_CAF1 6840 120 + 1 UGGCCUUUUGUACUCGCUGCCCAGGCGGUCACACUAAAAAUACCGAAAGCGCCGUUGUUUUUUAGGGCGUUUUAUUCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU ((((....((((...(((((....))))).....((((...(((.((((((((.(........).)))))))).........((......)))))..))))......))))..))))... ( -27.20) >DroSim_CAF1 15207 120 + 1 UGGCGUUUUGUAGCCGCUGCCCAGGCGGUCACACUAAAAAUACCGAAAGCGCCGUUGUUUUUUAGGGCGUUUUAUUCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU (((((...((((((((((.....)))))......((((...(((.((((((((.(........).)))))))).........((......)))))..)))).....))))).)))))... ( -32.00) >DroEre_CAF1 15178 120 + 1 UGGCAUUUUGCACUCGCUGCGCAGGCGGUCACACUAUAAAUACCGAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU (((((....(((.....)))(((((((..(((((((.(((((.((.......)).)))))..)))(((......)))............))))..)))))))..........)))))... ( -33.00) >DroYak_CAF1 13447 120 + 1 UGGCUAUUUGCAGUCGCUGAGCAGGCGGUCACACUGUAAAUACCAAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU ((((((((((((((((((.....)))).....))))))))))...((((((((.(........).))))))))((((((...........)))))).................))))... ( -33.90) >DroPer_CAF1 42506 92 + 1 ----------------------AUGCGGUCACACUUUUAAUACUAAGAGAG----UAUUUUCUAAGAUGUUUUGUUCACAUUA--UAGUUGUGGUUGCGUUCUUGUCUCUAUUGGCAUUU ----------------------(((((..((((((((((....))))))..----......(((.(((((.......))))).--))).))))..)))))...((((......))))... ( -20.30) >consensus UGGCGUUUUGUACUCGCUGCCCAGGCGGUCACACUAAAAAUACCAAAAGCGCCGUUGUUUUUUAGGGCGUUUUAGCCACCUUACUUCUUUGUGGUUGUUUGCCUAUCUACAUUGCCAUUU ((((.....((....))....((((((..((((............((((((((.(........).))))))))................))))..))))))............))))... (-18.77 = -19.39 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:13 2006