| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,919,968 – 20,920,080 |
| Length | 112 |
| Max. P | 0.794628 |
| Location | 20,919,968 – 20,920,080 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 96.07 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -22.16 |
| Energy contribution | -22.56 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20919968 112 - 27905053 UUUGGCUUUUGCAUGAAAUUGAAAAAUAAAUUAUGAGCACCAGCGUAUUUGCAUUAUCUUGUACGUUUGCCAGCUUUAGUUGAACAUAUCCGUACAAAUAAAUUAAGGUGCU ...........(((((.(((....)))...)))))((((((.(((....))).((((.(((((((..((.((((....))))....))..))))))))))).....)))))) ( -25.10) >DroSec_CAF1 3267 112 - 1 UUUGGCUUUUGCAUGAAAUUGAAAAAUAAAUUAUGAGCACCAGCGUAUUUGCUUUAUCAUGUACGUUUGCCAGCUUUAGUUGAACAUAUCCCUACAAAUAAAUUAAGGUGCU ...........(((((.(((....)))...)))))(((((((((((((.((......)).)))))))...((((....))))........................)))))) ( -20.80) >DroSim_CAF1 11677 112 - 1 UUUGGCUUUUGCAUGAAAUUGAAAAAUAAAUUAUGAGCACCAGCGUAUUUGCUUUAUCAUGUACGUUUGCCAGCUUUAGUUGAACAUAUCCGUACAAAUAAAUUAAGGUGCU ...........(((((.(((....)))...)))))((((((((((....))))......((((((..((.((((....))))....))..))))))..........)))))) ( -23.90) >DroEre_CAF1 11674 112 - 1 UUUGGCUUUUGCAUGAAAUUGAAAAAUAAAUUAUGAGCACCAGCGUAUUUGCAUUAUGUUGUACGUUUACCAGCUUUAGUUGAAUAUAUCCGUACAAAUAAAUUAAAGUGCU ....(((..(((....((((........))))....)))..)))((((((........(((((((..((.((((....))))....))..)))))))........)))))). ( -21.49) >DroYak_CAF1 9865 112 - 1 UUUGGCUUUUGCAUGAAAUUGAAAAAUAAAUUAUGAGCACCAGCGUAUUUGCUUUAUGUUGUACGUUUACCAGCUUUAGCUGAACAUAUCCGUACAAAUAAAUUGAGGUGCU ...........(((((.(((....)))...)))))((((((.(((....)))(((((.(((((((..((.((((....))))....))..))))))))))))....)))))) ( -27.80) >consensus UUUGGCUUUUGCAUGAAAUUGAAAAAUAAAUUAUGAGCACCAGCGUAUUUGCUUUAUCUUGUACGUUUGCCAGCUUUAGUUGAACAUAUCCGUACAAAUAAAUUAAGGUGCU ...........(((((.(((....)))...)))))((((((.(((....))).((((.(((((((..((.((((....))))....))..))))))))))).....)))))) (-22.16 = -22.56 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:10 2006