| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,689,283 – 2,689,469 |
| Length | 186 |
| Max. P | 0.874734 |
| Location | 2,689,283 – 2,689,394 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 86.76 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -27.30 |
| Energy contribution | -27.72 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2689283 111 + 27905053 UACUAGUCAUUUUGGAAGUGCGUUUGUUGGUUUUUAGGCAAAUACCGGGCACAGGAGUGAGUUUGGGAAUCGGGAGUUGCGCACUUGCUUGGCCACGAGGGCAAACAAAAA .........(((((.((((((((((.(((((((((((((..((.((.......)).))..))))))))))))).))..))))))))..(((.((....)).))).))))). ( -32.20) >DroSec_CAF1 48543 111 + 1 AACUAGUCAGUUUGGAAGUGCGUUUGUUGGUUUUUAGGCAAAUAACGGGCACAGGAGUGAGUUUGGGAAUCGGGAGUUGCGCACUUGCUUGCCCACGAGGGCAAACAAAAA .........(((((.((((((((((.(((((((((((((..((..(.......)..))..))))))))))))).))..)))))))).)..((((....))))))))..... ( -33.60) >DroSim_CAF1 41755 111 + 1 AACUAGUCAGUUUGGAAGUGCGUUUGUUGGUUUUUAGGCAAAUAACGGGCACAGGAGUGAGUUUGGGAAUCGGGAGUUGCGCACUUGCUUGGCCACGAGGGCAAACAAAAA .........(((((.((((((((((.(((((((((((((..((..(.......)..))..))))))))))))).))..)))))))).((((....))))..)))))..... ( -30.60) >DroEre_CAF1 42843 91 + 1 UACUAGUCAUGUUGGAAGUGCGCCUCCUGGUUUUUAGGCAAAUACCAGGCACGGGAGUGAGUUUGGGACUCGGGAGUUGCGCACUUGCUUG-------------------- .............(.((((((((((((((..((((((((..((.((.......)).))..))))))))..))))))..)))))))).)...-------------------- ( -32.10) >DroYak_CAF1 49511 111 + 1 UACUAGUCAUUUGGGAAGUGCGUCUGUUGGUUUUUAGGCAAAUACCGGGCACAGGAGUGAGUUUGGAAACCGGGAGUUGCGCACUUGCUUGGCCACGAGGGCAAACAAAAA .........(((((.((((((((((.(((((((((((((..((.((.......)).))..))))))))))))).))..)))))))).)(((.((....)).))).)))).. ( -37.90) >consensus UACUAGUCAUUUUGGAAGUGCGUUUGUUGGUUUUUAGGCAAAUACCGGGCACAGGAGUGAGUUUGGGAAUCGGGAGUUGCGCACUUGCUUGGCCACGAGGGCAAACAAAAA .............(.((((((((((.(((((((((((((..((.((.......)).))..))))))))))))).))..)))))))).)(((.((....)).)))....... (-27.30 = -27.72 + 0.42)
| Location | 2,689,323 – 2,689,434 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.61 |
| Mean single sequence MFE | -43.54 |
| Consensus MFE | -37.56 |
| Energy contribution | -38.28 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2689323 111 - 27905053 GGAUCAGGAAUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCCGAUUCC-----CAA----ACUCACUCCUGUGCCCGGUAUU (((((.(((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).)))))).))).))))).-----...----((((((....)))...)))... ( -43.20) >DroSec_CAF1 48583 111 - 1 GGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGGCAAGCAAGUGCGCAACUCCCGAUUCC-----CAA----ACUCACUCCUGUGCCCGUUAUU ((..(((((..((((((((((...))))))))))((((((..(((((((((((....))))))))))).))))))...........-----...----......)))))..))....... ( -49.90) >DroSim_CAF1 41795 111 - 1 GGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCCGAUUCC-----CAA----ACUCACUCCUGUGCCCGUUAUU ((..(((((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).))))))...........-----...----......)))))..))....... ( -42.80) >DroYak_CAF1 49551 111 - 1 GGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCCGGUUUC-----CAA----ACUCACUCCUGUGCCCGGUAUU (((((.(((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).)))))).))).))..))-----)..----((((((....)))...)))... ( -43.20) >DroAna_CAF1 35062 114 - 1 GGAUGGCGAUUGCGCGUG--CGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCC-AGCAAGUGCGCAACUCCCGCUCCCGCUCCUCAGCUCACUCACU---CCUCCCGGCAUG (((.((.((.((.((..(--.(((((..(((.(.((((((..((((((.(((.....))).-)))))).))))))..).)))..)).))))...)).)).))...---)))))....... ( -38.60) >consensus GGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCCGAUUCC_____CAA____ACUCACUCCUGUGCCCGGUAUU ((..(((((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).)))))).............................)))))..))....... (-37.56 = -38.28 + 0.72)
| Location | 2,689,354 – 2,689,469 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.05 |
| Mean single sequence MFE | -46.87 |
| Consensus MFE | -38.50 |
| Energy contribution | -38.58 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2689354 115 - 27905053 G--GGCGGCC---AAAGGAUAACAUUACGUCCGAUCCCUGGGAUCAGGAAUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCC (--((((...---..............)))))(((((...))))).(((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).)))))).))). ( -47.93) >DroSec_CAF1 48614 115 - 1 G--GGCGGCC---AAAGGAUAACAUUACGUCCGAUCCCUGGGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGGCAAGCAAGUGCGCAACUCCC (--((.(((.---...((((........))))((.((((.((.(((.(......).))))).))))))))....((((((..(((((((((((....))))))))))).))))))).))) ( -53.30) >DroSim_CAF1 41826 115 - 1 G--GGCGGCC---AAAGGAUAACAUUACGUCCGAUCCCUGGGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCC (--((.(((.---...((((........))))((.((((.((.(((.(......).))))).))))))))....((((((..((((((((.((....)).)))))))).))))))).))) ( -46.20) >DroYak_CAF1 49582 113 - 1 G---GCGGCC---AAAGGAUAACAUUACGUCCGAUC-CUGGGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCC .---..((((---..(((((.((.....))...)))-)).)).)).(((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).)))))).))). ( -45.10) >DroAna_CAF1 35099 117 - 1 GUCGUCCGCCCAAAAAGGAUAACAUUGCGUCCGAUCCCGAGGAUGGCGAUUGCGCGUG--CGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCC-AGCAAGUGCGCAACUCCC (((((((.........((((........))))........)))))))((((((((.((--(...(((((((.((..(((.....)))..))...)))))))-.)))...)))))).)).. ( -41.83) >consensus G__GGCGGCC___AAAGGAUAACAUUACGUCCGAUCCCUGGGACCAGGACUACGCGUGGCCGAGGGUCGCGUGUUUGCGCUUUUUGUUUGCCCUCGUGGCCAAGCAAGUGCGCAACUCCC ......((((......((((........))))........)).)).(((..((((((((((...))))))))))((((((..((((((((.((....)).)))))))).)))))).))). (-38.50 = -38.58 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:58 2006