Locus 779

Sequence ID 3R_DroMel_CAF1
Location 2,686,134 – 2,686,238
Length 104
Max. P 0.755642
window1242

overview

Window 2

Location 2,686,134 – 2,686,238
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.77
Mean single sequence MFE -28.24
Consensus MFE -18.29
Energy contribution -19.38
Covariance contribution 1.09
Combinations/Pair 1.18
Mean z-score -2.13
Structure conservation index 0.65
SVM decision value 0.49
SVM RNA-class probability 0.755642
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2686134 104 - 27905053
UCUGCGCUGGGGAAAUCAUCUUGAUGAAUUUGCCAGAUGUCUA--GAUAAAUGAAGUAAUCUUCAGUUUCUAAAAUUCACUA--------------UAGACUGAAGAGAAAGCCAGACAG
((((.(((((.(((.((((....)))).))).)).........--..............((((((((((.((........))--------------.))))))))))...)))))))... ( -26.40)
>DroSec_CAF1 45538 104 - 1
UCUGCGCUGGGGAAAUCAUUUUGAUGAAUUUGCCAGAUGUCUA--GAUAAAUGAAGUAAUCUUCAGUUUCCAAAAUUCACUU--------------UAGACUGAAGAGAAAGCUAGACAG
......((((.(((.((((....)))).))).)))).((((((--(.............((((((((((.............--------------.)))))))))).....))))))). ( -28.21)
>DroSim_CAF1 38691 104 - 1
UCUGCGCUGGGGAAAUCAUUUUGAUGAAUUUGCCAGAUGUCUA--GAUAAAUGAAGUAAUCUUCAGUUUCCAAAAUUCACUU--------------UAGACUGAAGAGAAAGCUAGACAG
......((((.(((.((((....)))).))).)))).((((((--(.............((((((((((.............--------------.)))))))))).....))))))). ( -28.21)
>DroEre_CAF1 39522 104 - 1
UCUGCGCUGGGGAAAUCAUCUUGAUGAAUUUGCCAGAUGUCUA--GAUAAAUGAAGUAAUCUCCAGCUUCUAAACUGCACUU--------------AAGACUGAAGAGAAAGCUGGACAG
((((((((((.(((.((((....)))).))).)))).)))..)--))..............((((((((((......(....--------------..).......)).))))))))... ( -25.02)
>DroYak_CAF1 46543 104 - 1
UCUGCGCUGGGGAAAUCAUCUUGAUGAAUUUGCCAGAUGUCUA--GAUAAAUGAAGUAAUCUUCAGCUUCUAAAAUUCAUCA--------------AAGACGGAAGAGAAAGCUAGACAG
......((((.(((.((((....)))).))).)))).((((((--(.....(((((....))))).(((((...........--------------.....)))))......))))))). ( -27.09)
>DroAna_CAF1 32727 111 - 1
CCUCCUCUGGGGGAA--------AUCAAUCUGCCAGAUGUCCGAUGCUCGAUGAAGCAAUCUACGGCUAGAAAACUUCAUUUGGCAUGCCUCAUUCUAGGC-GAAGAGAAAGCCAGACAG
.....(((((.(((.--------.....))).)))))((((.((((((.(((((((...((((....))))...))))))).)))))((((......))))-...........).)))). ( -34.50)
>consensus
UCUGCGCUGGGGAAAUCAUCUUGAUGAAUUUGCCAGAUGUCUA__GAUAAAUGAAGUAAUCUUCAGCUUCUAAAAUUCACUU______________UAGACUGAAGAGAAAGCUAGACAG
......((((.(((.((((....)))).))).)))).((((((............((..(((((((((..............................)))))))))....)))))))). (-18.29 = -19.38 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:55 2006