Locus 778

Sequence ID 3R_DroMel_CAF1
Location 2,685,987 – 2,686,094
Length 107
Max. P 0.676491
window1241

overview

Window 1

Location 2,685,987 – 2,686,094
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.11
Mean single sequence MFE -37.94
Consensus MFE -25.53
Energy contribution -27.34
Covariance contribution 1.81
Combinations/Pair 1.25
Mean z-score -2.25
Structure conservation index 0.67
SVM decision value 0.30
SVM RNA-class probability 0.676491
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2685987 107 - 27905053
GACUCCUCCGGAGGUCGUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCCGAAACGCUGUGCUACUUUUGAGAUAUCCU
((((((...))).)))(((((((.((((((.((((((((((((((....)-------------)).((((((............)).))))))))))))))))))))))))))))..... ( -43.20)
>DroSec_CAF1 45391 107 - 1
GACUCCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCCGAGACGCUGUGCUGCUUUUCAGAUUUCCU
.........(((((((........(((..(.((((((((((((((....)-------------)).((((((............)).))))))))))))))))..)))....))))))). ( -36.60)
>DroSim_CAF1 38544 107 - 1
GACUCCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCCGAGACGCUGUGCUGCUUUUCAGAUUUCCU
.........(((((((........(((..(.((((((((((((((....)-------------)).((((((............)).))))))))))))))))..)))....))))))). ( -36.60)
>DroEre_CAF1 39375 107 - 1
GACUCCUCCGGAGGUCAGCUCAAUGGGUGGAUAUAGCGAUUCGUCCUUGG-------------AUCGGCACCAAUCAAAGUCAAGGAUGCUGAGGUGCUGUGCUGCUUUUGAGAUUUCCU
.....(((.(((((.((((((((.((..((((......))))..))))))-------------..(((((((..(((..(((...)))..)))))))))).))))))))))))....... ( -32.70)
>DroYak_CAF1 46396 107 - 1
GACUUCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG-------------AUCGGCAUCAAUCCAAGUCAAGGAUGAUGAGACGCUGUGCUGCUUUUGAGAUUUCCU
((((((....))))))(((((((.(((..(.(((((((((((((((((((-------------((........)))))))........)))))))))))))))..))))))))))..... ( -45.80)
>DroAna_CAF1 32580 108 - 1
GACGCCGCUCGAGGUCAUCUCAUCA------------ACUUCGACCUUGGGCAGCCAGACCCGAUCGGUACCAAUCAAAGUCAAGGAUGCCGGAACGCUGUGCUCCUUUUCAGAACUUCU
(((((.((((((((((.........------------.....)))))))))).)).......(((.(....).)))...)))(((((.(((((....))).)))))))............ ( -32.74)
>consensus
GACUCCUCCGGAGGUCAUCUCAAUGGGUGGAUAUAGCGUUUCGUCCUUGG_____________AUCGGCACCAAUCAAAGUCAAGGAUGCCGAGACGCUGUGCUGCUUUUCAGAUUUCCU
.........(((((((........((((((.(((((((((((((((((((..............................)))))))...))))))))))))))))))....))))))). (-25.53 = -27.34 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:54 2006