Locus 7761

Sequence ID 3R_DroMel_CAF1
Location 20,802,325 – 20,802,419
Length 94
Max. P 0.545500
window12521

overview

Window 1

Location 20,802,325 – 20,802,419
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.68
Mean single sequence MFE -20.14
Consensus MFE -14.91
Energy contribution -15.42
Covariance contribution 0.50
Combinations/Pair 1.25
Mean z-score -1.27
Structure conservation index 0.74
SVM decision value 0.02
SVM RNA-class probability 0.545500
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20802325 94 - 27905053
UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACCAAAGGCUGAAGUGCACUUAGAGAAAA-UAUAUUAGCAUUUUACAUU---------
..((((((((((...((((((.....))).)))....))))))))))........((((((((............-.......))))))))....--------- ( -20.51)
>DroSec_CAF1 18027 92 - 1
UUUUUGGCUUUUUCACGCUCACAGUCUGACUCGCCUCAAAAGCCAAACCA--GGCUGAAGUGCACUUAGAGAAAA-UAUAUUAGCAUUUUACAUU---------
..(((((((((((((.((.....)).)))........))))))))))...--...((((((((............-.......))))))))....--------- ( -16.41)
>DroSim_CAF1 17978 92 - 1
UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACCA--GGCUGAAGUGCACUUAGAGAAAA-UAUAUUUGCAUUUUACAUU---------
..((((((((((...((((((.....))).)))....))))))))))...--...(((((((((..((.......-..))..)))))))))....--------- ( -22.90)
>DroEre_CAF1 15653 101 - 1
UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACAA--GGCUGAAAUGCACUAGGAGAAAA-UAGAUUGCUUUUUUACAUAAAUUUCAUU
..((((((((((...((((((.....))).)))....))))))))))...--...((((((.......((((((.-........))))))......)))))).. ( -19.62)
>DroYak_CAF1 10821 101 - 1
UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACAA--GGCUGCAAUGCACUACGAGAAAU-UAGAUUAGUAUUUUACAUAAAUACUAUU
..((((((((((...((((((.....))).)))....))))))))))..(--(((......)).)).........-.....((((((((.....)))))))).. ( -22.80)
>DroAna_CAF1 12211 93 - 1
UUUUUGGCUUUUUCAUGUUCACAGUCUGACGCGCCUCAAAAGCCAACCAA--GGCGGAAUUACACUGAGAGAGGAGUAUAGG---UUUUCUUUUC------AUU
...(((((((((...((((((.....))).)))....)))))))))((..--...))...........((((((((......---..))))))))------... ( -18.60)
>consensus
UUUUUGGCUUUUUCACGCUCACAGUCUGACGCGCCUCAAAAGCCAAACAA__GGCUGAAGUGCACUUAGAGAAAA_UAUAUUAGCAUUUUACAUU_________
..((((((((((...((((((.....))).)))....))))))))))........((((((((....................))))))))............. (-14.91 = -15.42 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:06 2006