Locus 7731

Sequence ID 3R_DroMel_CAF1
Location 20,757,646 – 20,757,745
Length 99
Max. P 0.617573
window12466

overview

Window 6

Location 20,757,646 – 20,757,745
Length 99
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 53.23
Mean single sequence MFE -30.84
Consensus MFE -12.54
Energy contribution -15.10
Covariance contribution 2.56
Combinations/Pair 1.30
Mean z-score -1.32
Structure conservation index 0.41
SVM decision value 0.17
SVM RNA-class probability 0.617573
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20757646 99 - 27905053
-----AGCAAGUGACAGCGGCCAGGGUUGCCACCAUCAGCGGUGGAGCCGGCAGUGAUGCGAAAAUCACA----CUUUACUGCAGUCACUGAAUCCAAUCUAUCCUAA
-----....((((((.((((((..((((.(((((......)))))))))))).(((((......))))).----......))).)))))).................. ( -34.30)
>DroSim_CAF1 11984 98 - 1
-----AGCAAGUGACAGCGGCCAGGGUUGCCACCAUCAGCGGUGGAGCCGGCAGUGAUGCGAACAUCACA----CUAUACU-CAGUCACUGAAUCCAAUCUAUGCUAA
-----((((((((((....(((..((((.(((((......)))))))))))).((((((....)))))).----.......-..))))))((......))..)))).. ( -36.00)
>DroYak_CAF1 12219 103 - 1
-----AGCAAGUGACAGCGGCCAGGGUUGCCACCUUCGGCAGCAGAGCCGGCAGUGAUGCGAAAAUCACAGUCACCGUAAUAAAGUCACUGUUUCCAAUCAGUCCAAA
-----((((.(((((...(((....((((((......))))))...)))(((.(((((......))))).)))...........)))))))))............... ( -33.10)
>DroPer_CAF1 9598 103 - 1
GAGGUCCGGUGACUGCAUCAAGCUCCCCGAAAAUGGCCGCACUGUCGAUCCGCUUGCCACUCUUAAUUUC----CUGCUCC-AGAGCCUUGACAGACUUCUCGACGGC
..(((((((.((((......)).)).))).....))))...(((((((...(..((.((((((.......----.......-))))...)).))..)...))))))). ( -19.94)
>consensus
_____AGCAAGUGACAGCGGCCAGGGUUGCCACCAUCAGCAGUGGAGCCGGCAGUGAUGCGAAAAUCACA____CUGUACU_AAGUCACUGAAUCCAAUCUAUCCUAA
.........((((((....(((..((((.(((((......)))))))))))).(((((......)))))...............)))))).................. (-12.54 = -15.10 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:09 2006