| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,679,009 – 2,679,103 |
| Length | 94 |
| Max. P | 0.724464 |
| Location | 2,679,009 – 2,679,103 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.52 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -21.95 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2679009 94 + 27905053 GAUUGUUGCGCAUGUCCUUAGCCACAAGCUGCGUACUUGUGCAAUGAUU-AAUUCUCCAGGAC------------------AGCGGCGAAAGUUGCCACGAACCUAUAAGUAA------- (((..(((((((.((.(.((((.....)))).).)).)))))))..)))-........(((..------------------.(((((....)))))......)))........------- ( -27.70) >DroSec_CAF1 38509 94 + 1 GAUUGUUGCGCAUGUCUUUAGCCACAAGCUGCGUACUUGUGCAAUGAUU-AAUUCUCCAGGAC------------------AGCGGCGAAAGUUGCCACGAACCUAUAAGUAA------- (((..(((((((.((.(.((((.....)))).).)).)))))))..)))-........(((..------------------.(((((....)))))......)))........------- ( -26.50) >DroSim_CAF1 31670 94 + 1 GAUUGUUGCGCAUGUCUUUAGCCACAAGCUGCGUACUUGUGCCAUGAUU-AAUUCUCCAGGAC------------------AGCGGCGAAAGUUGCCACGAACCUAUAAGUAA------- (((..(.(((((.((.(.((((.....)))).).)).))))).)..)))-........(((..------------------.(((((....)))))......)))........------- ( -22.40) >DroEre_CAF1 31853 94 + 1 GAUUGUUGCGCAUGUCCUUAGCCACAAGCUAGGAACUUGUGCAAUGAUU-AAUUCUCCAGGAC------------------AGCGGCGAAAGUUGCCACGAACCUACAAGUAA------- (((..(((((((.((.((((((.....)))))).)).)))))))..)))-........(((..------------------.(((((....)))))......)))........------- ( -31.80) >DroYak_CAF1 38938 94 + 1 GAUUGUUGCGCAUGUCCUUAGCUACAAGAUACGUUUUUGUGCAAUUGUGGGGCUCUUCUGGAC------------------AGCGGCGAAAGUUGUCACGAACCUA-AAGUAA------- ..((((.((((.(((((..((((((((..((((....))))...))))..)))).....))))------------------)))(((....))))).)))).....-......------- ( -23.00) >DroAna_CAF1 26298 117 + 1 GACUGUUGCGCAUGUCCUUAGCCACAAGCUGCGUGCUUAUGCGAUGAUU-AAUUCGCCAGGACAACAGCAGCUCCAGUGGCAGCGGCGAAAGUUGCUCC--ACCUACGAUGAUUUUCCAA ....(((((...((((((.......((((.....))))..((((.....-...)))).))))))...)))))....((((.((((((....))))))))--))................. ( -40.10) >consensus GAUUGUUGCGCAUGUCCUUAGCCACAAGCUGCGUACUUGUGCAAUGAUU_AAUUCUCCAGGAC__________________AGCGGCGAAAGUUGCCACGAACCUAUAAGUAA_______ ((((((((((((.((.(.((((.....)))).).)).)))))))))))).................................(((((....)))))........................ (-21.95 = -22.07 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:43 2006