| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,731,427 – 20,731,517 |
| Length | 90 |
| Max. P | 0.789404 |
| Location | 20,731,427 – 20,731,517 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -24.72 |
| Consensus MFE | -17.50 |
| Energy contribution | -17.58 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20731427 90 + 27905053 -AUCUUGUAUGUAAA-UGCGUACGA-AAUGUGUUUCGCAAGGUGCGAAAACUACGGAAAGCCCAUUUAGAAGGUGCAGCGAGACGUUGA-AGA---C--------------- -.((((((((((...-.))))))..-.....(((((((..(((......))).......((((........)).)).)))))))....)-)))---.--------------- ( -23.20) >DroPse_CAF1 28424 99 + 1 -AG--CGUAUGUAAA-UGCGUACUAAAAUGUGUUUCGCAAGGUGCGAAAACUACGGAAGAGCCAUUUAGAAGGUGCAGCGAAACGUUGAGAGA---CGU-GGA-CGUG---- -.(--(((......)-)))(((((.(((((.(((((((.....))))).....(....).)))))))....))))).(((..(((((....))---)))-...-))).---- ( -26.90) >DroGri_CAF1 36394 106 + 1 UAUUUGGUAUGUAAA-UGCGUAUACGAAUGUGUUUCGCAAGGUGCGAAAACUACGGAAAAGCCAUUUAGAAUGUGCAGCGAAACGUUGA-AGAAGACAACCAA-CAAGA--- ((((((((((((...-.)))))).)))))).(((((((..(((......)))........(((((.....))).)).)))))))((((.-..........)))-)....--- ( -23.20) >DroWil_CAF1 33850 104 + 1 -UUUAUGUAUGUAAA-UGCGUACGU--AUGUGUUUCGCAAGGUGCGAAAUCUACGGAAAACCCAUUUAGAAGGUGCAACGAAACGUUGAAAGA---CGU-CAAAGAAGACAC -..(((((((((...-.))))))))--)...((((((.....((((...((((.((.....))...))))...)))).))))))(((....))---)((-(......))).. ( -26.60) >DroMoj_CAF1 36634 90 + 1 -AGCUCGUAUGUAAA-UGCGUAAA--AAUGUGUUUCGCAAGGUGCGAAAACUACGGAAAAGCCAUUUAGAAUGUGCAGCGAAACGUUGC-AGA---CG-------------- -....(((.(.((((-((.((...--..((((((((((.....))))))..)))).....)))))))).)...(((((((...))))))-).)---))-------------- ( -22.10) >DroAna_CAF1 27726 104 + 1 -AUCGUGUAUGUAAAUUGCGUACGA-AAUGUGUUUCGCAAGGUGCGAAAACUACGGAAAACCCAUUUAGAAGGUGCAGCGAAACGUUGA-GAG---CUU-GGU-GGUGGCAC -....(((((((.....))))))).-...(((((((((.....))))).(((((((.....)).......((((.(((((...))))).-..)---)))-.))-))).)))) ( -26.30) >consensus _AUCUUGUAUGUAAA_UGCGUACGA_AAUGUGUUUCGCAAGGUGCGAAAACUACGGAAAACCCAUUUAGAAGGUGCAGCGAAACGUUGA_AGA___CGU___A____G____ ......((((((.....))))))........(((((((....((((....(((.((.....))...)))....)))))))))))............................ (-17.50 = -17.58 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:58 2006