Locus 7721

Sequence ID 3R_DroMel_CAF1
Location 20,729,970 – 20,730,062
Length 92
Max. P 0.643069
window12453

overview

Window 3

Location 20,729,970 – 20,730,062
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 91.29
Mean single sequence MFE -26.47
Consensus MFE -21.49
Energy contribution -22.72
Covariance contribution 1.22
Combinations/Pair 1.03
Mean z-score -2.16
Structure conservation index 0.81
SVM decision value 0.23
SVM RNA-class probability 0.643069
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20729970 92 - 27905053
AAUGCGAAUCAGAGUC--GAGUUUCGGCCACAGCGUCUUUCUU-UCUUCGAACUGUGCUGGAUGGCUUGUUUUCUCUUUGUUUUGCAUUUU-GGGU
((((((((.(((((..--(((..(.((((((((((.(.(((..-.....)))..))))))..))))).)..))).))))).))))))))..-.... ( -26.80)
>DroSec_CAF1 26219 92 - 1
AAUGCGAAUCAGAGUC--GAGUUUCGGCCACAGCGUCUUUCUU-UCUUCGAACUGUGCUGGAUGGCUUGUUUUCUCUUUGUUUUGCAUUUU-GGGU
((((((((.(((((..--(((..(.((((((((((.(.(((..-.....)))..))))))..))))).)..))).))))).))))))))..-.... ( -26.80)
>DroSim_CAF1 27185 92 - 1
AAUGCGAAUCAGAGUC--GAGUUUCGGCCACAGCGUCUUUCUU-UCUUCGAACUGUGCUGGAUGGCUUGUUUUCUCUUUGUUUUGCAUUUU-GGGU
((((((((.(((((..--(((..(.((((((((((.(.(((..-.....)))..))))))..))))).)..))).))))).))))))))..-.... ( -26.80)
>DroEre_CAF1 31429 92 - 1
AAUGCGAAUCAAAGUC--GAGUUUCGGCCACAGCGUCUUUCUU-UCUUCGAACUGUGCUGGAUGGCUUGUUUUCUCUUUGUUUUGCAUUUG-GGGU
((((((((.(((((..--(((..(.((((((((((.(.(((..-.....)))..))))))..))))).)..))).))))).))))))))..-.... ( -26.70)
>DroYak_CAF1 27809 92 - 1
AAUGCGAAUCAGAGUC--GAGUUUCGGCCACAGCGUCUUUCUU-UCUUCGAACUGUGCUGGAUGGCUUGUUUUCUCUUUGUUUUGCAUUUG-AAGU
((((((((.(((((..--(((..(.((((((((((.(.(((..-.....)))..))))))..))))).)..))).))))).))))))))..-.... ( -26.80)
>DroAna_CAF1 26272 94 - 1
AAUGCGAAUCACAGUCCCCAUUUUGUAGCACAGCGUCUUUCUUUUAUUCGACCCCAGCUGGAUGGCUGGUUUU--CUUUGUUUUGCAUUUUGGGGC
...............(((((...(((((.((((.(((............))).((((((....))))))....--..)))).)))))...))))). ( -24.90)
>consensus
AAUGCGAAUCAGAGUC__GAGUUUCGGCCACAGCGUCUUUCUU_UCUUCGAACUGUGCUGGAUGGCUUGUUUUCUCUUUGUUUUGCAUUUU_GGGU
((((((((.(((((....(((..(.((((((((((...(((........)))...)))))..))))).)..))).))))).))))))))....... (-21.49 = -22.72 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:57 2006