Locus 7719

Sequence ID 3R_DroMel_CAF1
Location 20,726,150 – 20,726,269
Length 119
Max. P 0.668991
window12451

overview

Window 1

Location 20,726,150 – 20,726,269
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.59
Mean single sequence MFE -37.52
Consensus MFE -27.91
Energy contribution -28.25
Covariance contribution 0.34
Combinations/Pair 1.28
Mean z-score -1.50
Structure conservation index 0.74
SVM decision value 0.29
SVM RNA-class probability 0.668991
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20726150 119 + 27905053
UUUGCAGCUCCUGGUCGAAGGCCGUUGUGUUGGGACAGAGGAAUCGAUAGUCCUGCACCUGUUGGACAAACGGAUUAGCUCUUCGAUGAAGGAGCUGCGCAAAAUACAGC-GAAAGCAUC
...(((((((((.(((((((((....((((.(((((.((....))....)))))))))(((((.....)))))....)).)))))))..)))))))))..........((-....))... ( -49.10)
>DroVir_CAF1 27636 114 + 1
UCUGUAGCUCCUGAUCGAAGGCAGUGCUAUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUGAGAGCUGCGCAA---ACAGU-AAA--CGGC
...((((((((..(((((((((((..(((((...((.......)))))))..)))).((....))...............)))))))..).)))))))....---.....-...--.... ( -34.90)
>DroGri_CAF1 29568 115 + 1
UCUGCAGCUCUUGAUCGAAGGCCGUGCUAUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUGAGAGCUGCGCAA---ACAGACAAA--CGGC
...((((((((((((((((((((.((((.....))))..))........((((.((....)).))))............)))))))).))))))))))....---.........--.... ( -39.10)
>DroWil_CAF1 27923 113 + 1
UUUGCAGCUCUUGAUCAAACGCAGUGGUAUUUGGGCAGAGGAACCGAUAAUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUAUGAGCUGCGCA--AUAC-----AAAACAGC
...((((((((((.......((((.(((..((((.........))))..))))))).((....)).))).((((.......))))......)))))))...--....-----........ ( -28.50)
>DroMoj_CAF1 27748 112 + 1
UCUGCAGCUCUUGAUCGAAGGCAGUGCUGUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAUUUCUUCGAUGUGAGAGCUGCGCAA---ACAGU-UAG--CC--
...(((((((((((((((((((((..(((((...((.......)))))))..)))).((....))...............))))))).))))))))))....---.....-...--..-- ( -39.50)
>DroAna_CAF1 22613 112 + 1
UCUGAAGCUCCUGGUCAAAGGCCGUCGUGUUGGGGCAGAGGAAGCGGUAGUCCUGCACCUGUUGGACAAACGGAUUAACUCUUCGGUGUAGCAGCUGCCCCCAA--------AAAGCAUC
......(((...(((.....)))........(((((((.....((((.....))))..((((((.((....(((.....)))...)).)))))))))))))...--------..)))... ( -34.00)
>consensus
UCUGCAGCUCCUGAUCGAAGGCAGUGCUAUUUGGGCAGAGGAAGCGAUAGUCCUGCACCUGUUGGACAAACGAAUUAACUCUUCGAUGUAAGAGCUGCGCAA___ACAG___AA__CAGC
...((((((((((((((((((..((...(((((......(....)....((((.((....)).))))...)))))..)))))))))).))))))))))...................... (-27.91 = -28.25 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:55 2006